Os03g0831200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GATA transcription factor 19.
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Os03g0831200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GATA transcription factor 19.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.6 | 0.292 | 11.7 | 0.523 | 0.0283 | -1.05 | -0.205 | -1.95 | 0.408 | 23.3 | 19.33 | 104 | -- | -- |
| 41.19 | 0.299 | 11.7 | 0.874 | 0.041 | -1.1 | 0.141 | -- | 0.494 | 23.1 | 21.34 | 113 | -- | -- |
| 38.6 | 0.289 | 11.7 | 0.566 | 0.0618 | -1.08 | -- | -1.83 | 0.407 | 23.5 | 18.7 | 140 | -- | -- |
| 41.28 | 0.299 | 11.7 | 0.852 | 0.0409 | -1.09 | -- | -- | 0.493 | 24 | 21.44 | 113 | -- | -- |
| 38.77 | 0.29 | 11.7 | 0.564 | -- | -1.09 | -- | -1.82 | 0.417 | -- | 18.86 | 119 | -- | -- |
| 59.08 | 0.36 | 11.7 | 0.63 | 0.452 | -- | 0.794 | -- | 0.316 | 3.41 | -- | -- | -- | -- |
| 61.04 | 0.366 | 11.7 | 0.615 | 0.455 | -- | -- | -- | 0.312 | 3.27 | -- | -- | -- | -- |
| 41.35 | 0.299 | 11.7 | 0.86 | -- | -1.12 | -- | -- | 0.499 | -- | 21.27 | 107 | -- | -- |
| 58.81 | 0.357 | 11.7 | -- | 0.136 | -0.83 | -- | -- | 0.343 | 1.84 | 23.16 | 122 | -- | -- |
| 72.75 | 0.399 | 11.7 | 0.634 | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
| 71.01 | 0.394 | 11.7 | -- | 0.467 | -- | -- | -- | 0.243 | 3.27 | -- | -- | -- | -- |
| 59.55 | 0.359 | 11.7 | -- | -- | -0.937 | -- | -- | 0.352 | -- | 23.52 | 102 | -- | -- |
| 83.37 | 0.426 | 11.7 | -- | -- | -- | -- | -- | 0.253 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.88 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 6 | 38.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 8 | 38.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 15 | 38.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 18 | 38.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 21 | 38.73 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 22 | 38.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 40 | 39.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 47 | 39.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 49 | 39.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 70 | 39.29 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 76 | 39.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 79 | 39.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 117 | 39.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 154 | 39.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 182 | 40.02 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 190 | 40.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 194 | 40.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 242 | 40.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 300 | 40.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 318 | 40.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 341 | 40.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 393 | 40.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 408 | 40.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 454 | 41.12 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 463 | 41.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 17 |
| 490 | 41.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 538 | 41.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 544 | 41.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 560 | 41.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 584 | 41.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 18 |
| 709 | 41.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 761 | 41.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 867 | 41.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 899 | 42.05 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |