FiT-DB / Search/ Help/ Sample detail

Os01g0343300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, GATA-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0345) R2 : 0.824
β1 : -3.21 (0.126) R2dD : 0.277 R2D : 0.235
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.4 (0.0694) R2dE : 0.507 R2E : 0.505
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.09 (0.278) R2dD*E : 0.0182 R2D*E : 0.00316
γ1 : -0.831 (0.0736) R2dN8 : 0.069 R2N8 : 0.00736
σ : 0.645
deviance : 191.93
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 15.95
memory length : 128
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.2
open length of G : 8.41

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.09 0.641 10.6 -3.3 0.34 -2.29 -1.61 0.845 -0.86 14.8 16.96 112 19 8.65
187.27 0.637 10.6 -3.27 0.376 -2.25 -2.34 -- -0.855 14.2 15.7 110 19.1 8.63
187.29 0.637 10.6 -3.31 0.38 -2.25 -- 1.91 -0.851 13.3 15.15 129 19.1 8.4
207 0.67 10.6 -3.34 0.38 -2.25 -- -- -0.865 13.2 15.2 129 19.1 8.4
191.93 0.645 10.6 -3.21 -- -2.4 -- 2.09 -0.831 -- 15.95 128 19.2 8.41
293.85 0.804 10.6 -3.26 2.69 -- -1.88 -- -0.8 12.6 -- -- -- --
308.96 0.823 10.6 -3.33 2.69 -- -- -- -0.811 12.5 -- -- -- --
209.57 0.674 10.6 -3.28 -- -2.51 -- -- -0.844 -- 16.57 136 19 8.48
481.4 1.02 10.5 -- 0.6 -2.16 -- -- -0.576 13.5 18.3 105 19 8.82
764.17 1.29 10.6 -3.43 -- -- -- -- -0.856 -- -- -- -- --
601.99 1.15 10.5 -- 2.74 -- -- -- -0.439 12.6 -- -- -- --
484.23 1.02 10.6 -- -- -2.66 -- -- -0.623 -- 18.03 166 18.8 8.65
1074.07 1.53 10.5 -- -- -- -- -- -0.476 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.58 temperature 15.0 90 > th dose independent rect. 19 9
2 194.62 precipitation 0.1 90 < th dose independent rect. 4 15
3 194.62 precipitation 0.1 90 < th dose dependent rect. 4 15
8 197.75 temperature 30.0 90 < th dose independent rect. 19 9
9 197.75 humidity 50.0 90 > th dose independent rect. 19 9
11 197.75 atmosphere 995.0 90 > th dose independent rect. 19 9
12 197.75 radiation 1.0 90 < th dose independent rect. 19 9
17 197.75 temperature 10.0 90 > th dose independent rect. 4 15
18 197.75 atmosphere 1015.0 90 < th dose independent rect. 4 15
19 197.75 radiation 1.0 90 < th dose dependent rect. 19 9
24 198.26 wind 9.0 90 < th dose independent rect. 19 9
25 201.28 wind 9.0 90 < th dose independent rect. 4 15
26 201.54 precipitation 0.1 90 < th dose independent rect. 19 9
27 201.54 precipitation 0.1 90 < th dose dependent rect. 19 9
29 202.29 precipitation 0.1 270 < th dose independent rect. 2 16
30 202.29 precipitation 0.1 270 < th dose dependent rect. 2 16
35 202.94 precipitation 0.1 270 < th dose independent rect. 14 16
36 202.94 precipitation 0.1 270 < th dose dependent rect. 14 16
37 202.96 temperature 15.0 10 > th dose independent rect. 20 9
41 204.65 temperature 10.0 90 > th dose dependent rect. 19 9
70 206.02 temperature 10.0 270 > th dose independent rect. 2 16
71 206.02 atmosphere 1015.0 270 < th dose independent rect. 2 16
83 207.07 wind 9.0 270 < th dose independent rect. 6 8
87 207.50 radiation 40.0 270 < th dose independent rect. 14 16
91 207.54 atmosphere 995.0 90 > th dose independent rect. 4 15
94 207.65 temperature 10.0 270 > th dose independent rect. 6 8
95 207.65 atmosphere 995.0 270 > th dose independent rect. 6 8
96 207.65 atmosphere 1015.0 270 < th dose independent rect. 6 8
97 207.65 temperature 10.0 270 > th dose independent rect. 14 16
98 207.97 precipitation 0.1 270 < th dose independent rect. 6 8
99 207.97 precipitation 0.1 270 < th dose dependent rect. 6 8
100 208.20 humidity 50.0 270 > th dose independent rect. 6 8
126 208.90 wind 9.0 270 < th dose independent rect. 14 16
127 208.94 wind 9.0 270 < th dose independent rect. 2 16
128 208.96 humidity 50.0 90 > th dose dependent rect. 19 9
133 209.33 temperature 15.0 270 > th dose independent rect. 7 19
134 209.43 radiation 1.0 10 < th dose dependent rect. 20 9
155 210.15 precipitation 0.1 10 < th dose independent rect. 5 15
156 210.15 precipitation 0.1 10 < th dose dependent rect. 5 15
161 210.39 temperature 15.0 270 > th dose independent rect. 8 17
172 210.92 temperature 30.0 10 < th dose independent rect. 20 9
173 210.92 humidity 50.0 10 > th dose independent rect. 20 9
176 210.92 atmosphere 995.0 10 > th dose independent rect. 20 9
177 210.92 radiation 1.0 10 < th dose independent rect. 20 9
182 210.92 temperature 10.0 10 > th dose independent rect. 5 15
184 210.92 atmosphere 1015.0 10 < th dose independent rect. 5 15
188 211.35 wind 9.0 10 < th dose independent rect. 20 9
213 212.11 precipitation 0.1 270 < th dose independent rect. 2 5
214 212.11 precipitation 0.1 270 < th dose dependent rect. 2 5
226 212.75 atmosphere 1010.0 90 < th dose independent rect. 20 8
228 213.01 atmosphere 995.0 270 > th dose independent rect. 2 16
234 213.17 precipitation 0.1 10 < th dose independent rect. 20 9
236 213.17 precipitation 0.1 10 < th dose dependent rect. 20 9
241 213.27 wind 5.0 270 < th dose independent rect. 2 5
246 213.51 radiation 1.0 10 < th dose dependent rect. 20 16
249 213.58 precipitation 0.1 270 < th dose independent rect. 3 3
250 213.58 precipitation 0.1 270 < th dose dependent rect. 3 3
251 213.61 atmosphere 995.0 270 > th dose independent rect. 14 16
252 213.65 radiation 1.0 10 < th dose dependent rect. 20 12
258 213.69 wind 9.0 270 < th dose dependent rect. 2 5
262 213.84 wind 1.0 270 > th dose independent rect. 6 8
263 213.85 wind 9.0 270 < th dose independent rect. 7 19
271 214.27 precipitation 0.1 270 < th dose independent rect. 1 7
272 214.27 precipitation 0.1 270 < th dose dependent rect. 1 7
274 214.35 temperature 10.0 270 > th dose independent rect. 2 5
276 214.35 temperature 30.0 270 < th dose independent rect. 2 5
277 214.35 humidity 50.0 270 > th dose independent rect. 2 5
279 214.35 atmosphere 995.0 270 > th dose independent rect. 2 5
280 214.35 atmosphere 1015.0 270 < th dose independent rect. 2 5
281 214.35 radiation 40.0 270 < th dose independent rect. 2 5
287 214.41 radiation 1.0 10 < th dose dependent sin 10 NA
292 214.66 temperature 10.0 270 > th dose dependent rect. 19 18
298 214.84 wind 9.0 270 < th dose dependent rect. 3 3
306 215.19 radiation 40.0 270 < th dose dependent rect. 2 5
307 215.27 wind 7.0 270 < th dose independent rect. 1 7
309 215.31 wind 1.0 270 > th dose independent rect. 14 16
322 215.66 radiation 1.0 270 < th dose dependent rect. 10 16
329 215.87 atmosphere 1010.0 10 < th dose independent rect. 20 9
330 215.90 wind 9.0 270 < th dose independent rect. 6 21
340 216.14 wind 9.0 270 < th dose independent rect. 8 17
342 216.17 temperature 15.0 270 > th dose independent rect. 20 17
343 216.31 wind 7.0 90 < th dose dependent rect. 4 5
347 216.33 wind 9.0 10 < th dose independent rect. 5 15
352 216.37 temperature 10.0 270 > th dose independent rect. 3 3
354 216.37 temperature 30.0 270 < th dose independent rect. 3 3
355 216.37 humidity 50.0 270 > th dose independent rect. 3 3
358 216.37 atmosphere 995.0 270 > th dose independent rect. 3 3
359 216.37 atmosphere 1015.0 270 < th dose independent rect. 3 3
360 216.37 radiation 20.0 270 < th dose independent rect. 3 3
365 216.40 radiation 1.0 270 < th dose independent rect. 10 16
374 216.63 temperature 10.0 270 > th dose independent rect. 1 7
376 216.63 temperature 30.0 270 < th dose independent rect. 1 7
377 216.63 humidity 50.0 270 > th dose independent rect. 1 7
379 216.63 atmosphere 995.0 270 > th dose independent rect. 1 7
380 216.63 atmosphere 1015.0 270 < th dose independent rect. 1 7
385 216.66 wind 9.0 90 < th dose dependent rect. 19 9
410 216.85 radiation 40.0 270 < th dose independent rect. 1 7
413 216.91 atmosphere 995.0 10 > th dose independent rect. 5 15
414 216.95 radiation 1.0 270 < th dose dependent rect. 7 19
418 217.00 atmosphere 1015.0 90 < th dose dependent rect. 20 8
441 217.21 radiation 1.0 270 > th dose independent rect. 6 8
465 217.40 atmosphere 1015.0 10 < th dose dependent rect. 20 9
470 217.66 radiation 40.0 270 < th dose dependent rect. 3 3
477 217.79 radiation 1.0 270 < th dose independent rect. 7 19
526 218.17 humidity 50.0 270 > th dose dependent rect. 2 5
559 218.95 atmosphere 995.0 270 > th dose independent rect. 7 19
568 219.05 temperature 10.0 1440 > th dose independent rect. 21 8
571 219.05 temperature 30.0 1440 < th dose independent rect. 21 8
575 219.05 humidity 50.0 1440 > th dose independent rect. 21 8
581 219.05 atmosphere 995.0 1440 > th dose independent rect. 21 8
582 219.05 radiation 20.0 1440 < th dose independent rect. 21 8
594 219.05 temperature 10.0 1440 > th dose independent rect. 5 16
606 219.23 precipitation 0.1 270 < th dose independent rect. 13 8
607 219.23 precipitation 0.1 270 < th dose dependent rect. 13 8
608 219.26 precipitation 0.1 270 < th dose independent rect. 7 19
609 219.26 precipitation 0.1 270 < th dose dependent rect. 7 19
610 219.27 humidity 50.0 10 > th dose dependent rect. 20 9
613 219.30 humidity 50.0 270 > th dose dependent rect. 3 3
666 219.81 radiation 1.0 10 < th dose independent rect. 20 16
682 219.95 precipitation 0.1 90 < th dose independent rect. 4 5
683 219.95 precipitation 0.1 90 < th dose dependent rect. 4 5
686 219.98 radiation 1.0 10 < th dose independent rect. 20 12
731 220.42 wind 7.0 90 < th dose independent rect. 4 5
735 220.45 temperature 10.0 90 > th dose independent rect. 4 5
737 220.45 humidity 50.0 90 > th dose independent rect. 4 5
738 220.45 atmosphere 995.0 90 > th dose independent rect. 4 5
739 220.45 atmosphere 1015.0 90 < th dose independent rect. 4 5
742 220.45 humidity 50.0 90 > th dose dependent rect. 4 5
777 220.84 radiation 1.0 10 < th dose independent sin 11 NA
789 221.00 humidity 50.0 270 > th dose independent rect. 14 16
791 221.05 temperature 30.0 90 < th dose independent rect. 4 5
794 221.18 wind 1.0 270 > th dose independent rect. 13 8
804 221.28 radiation 40.0 90 < th dose independent rect. 4 5
814 221.40 wind 9.0 270 < th dose independent rect. 21 16
817 221.41 precipitation 0.1 270 < th dose independent rect. 8 17
819 221.41 precipitation 0.1 270 < th dose dependent rect. 8 17
826 221.52 atmosphere 995.0 270 > th dose independent rect. 8 17
844 221.69 temperature 10.0 270 > th dose independent rect. 13 8
848 221.69 atmosphere 995.0 270 > th dose independent rect. 21 16
852 221.74 humidity 50.0 270 > th dose independent rect. 21 16
860 221.98 radiation 40.0 90 < th dose dependent rect. 4 5
876 222.16 atmosphere 995.0 90 > th dose independent rect. 9 19
878 222.17 radiation 1.0 10 > th dose independent sin 11 NA
940 222.34 atmosphere 1015.0 270 < th dose independent rect. 13 7
969 222.50 temperature 10.0 270 > th dose dependent rect. 6 8
972 222.58 humidity 50.0 270 > th dose independent rect. 7 19
994 222.60 radiation 1.0 270 > th dose independent rect. 14 16