Os05g0155400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, GATA-type domain containing protein.
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Os05g0155400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, GATA-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194.84 | 0.656 | 10.4 | -2.03 | 0.678 | 1.5 | 0.617 | -0.422 | -0.176 | 17.4 | 23.04 | 9 | -- | -- |
| 195.61 | 0.651 | 10.4 | -2.02 | 0.691 | 1.55 | 0.669 | -- | -0.177 | 17 | 23.05 | 8 | -- | -- |
| 195.69 | 0.652 | 10.4 | -2.03 | 0.691 | 1.55 | -- | -0.472 | -0.171 | 17 | 23.05 | 8 | -- | -- |
| 196.6 | 0.653 | 10.4 | -2.01 | 0.681 | 1.53 | -- | -- | -0.177 | 17.1 | 22.68 | 6 | -- | -- |
| 218.29 | 0.688 | 10.4 | -2.06 | -- | 1.4 | -- | -0.465 | -0.199 | -- | 22.05 | 5 | -- | -- |
| 239.64 | 0.726 | 10.4 | -2.06 | 1.5 | -- | 0.162 | -- | -0.186 | 22.2 | -- | -- | -- | -- |
| 239.75 | 0.725 | 10.4 | -2.07 | 1.5 | -- | -- | -- | -0.186 | 22.2 | -- | -- | -- | -- |
| 219.41 | 0.69 | 10.4 | -2.04 | -- | 1.4 | -- | -- | -0.197 | -- | 22.07 | 5 | -- | -- |
| 302.63 | 0.81 | 10.3 | -- | 0.749 | 1.63 | -- | -- | 0.047 | 16.6 | 23.25 | 6 | -- | -- |
| 375.88 | 0.906 | 10.4 | -2.04 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 352.29 | 0.878 | 10.3 | -- | 1.49 | -- | -- | -- | 0.0437 | 22.1 | -- | -- | -- | -- |
| 328.64 | 0.844 | 10.3 | -- | -- | 1.4 | -- | -- | 0.0308 | -- | 22.4 | 2 | -- | -- |
| 486.14 | 1.03 | 10.3 | -- | -- | -- | -- | -- | 0.0437 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.47 | radiation | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 6 | 193.29 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 8 | 193.87 | radiation | 20 | 10 | < th | dose dependent | sin | 23 | NA |
| 9 | 194.33 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 28 | 196.42 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 7 |
| 30 | 196.56 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 23 |
| 33 | 196.60 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 9 |
| 49 | 197.04 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 13 |
| 51 | 197.18 | radiation | 10 | 10 | > th | dose independent | sin | 22 | NA |
| 62 | 197.60 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 65 | 197.77 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 91 | 199.09 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 17 |
| 105 | 199.51 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 7 |
| 110 | 199.86 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 120 | 200.42 | radiation | 10 | 10 | < th | dose independent | sin | 23 | NA |
| 125 | 200.72 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 17 |
| 146 | 201.03 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 156 | 201.29 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 157 | 201.30 | radiation | 10 | 10 | > th | dose independent | rect. | 17 | 23 |
| 160 | 201.41 | radiation | 20 | 10 | > th | dose independent | no | NA | NA |
| 161 | 201.41 | radiation | 20 | 10 | > th | dose independent | rect. | 7 | 10 |
| 269 | 201.47 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 271 | 201.50 | radiation | 20 | 10 | < th | dose independent | no | NA | NA |
| 273 | 201.52 | radiation | 20 | 10 | < th | dose independent | rect. | 15 | 23 |
| 300 | 201.83 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 339 | 202.40 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 19 |
| 340 | 202.40 | radiation | 20 | 10 | < th | dose independent | rect. | 16 | 19 |
| 360 | 202.48 | radiation | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 368 | 202.62 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 473 | 202.89 | humidity | 80 | 270 | < th | dose independent | rect. | 6 | 7 |
| 474 | 202.93 | radiation | 20 | 10 | > th | dose independent | rect. | 15 | 23 |
| 475 | 202.99 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 504 | 203.24 | humidity | 90 | 270 | < th | dose dependent | rect. | 19 | 19 |
| 545 | 203.86 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 549 | 203.89 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 19 |
| 562 | 204.10 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 614 | 204.54 | radiation | 20 | 10 | < th | dose independent | rect. | 24 | 23 |
| 640 | 204.75 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 685 | 205.18 | humidity | 80 | 10 | < th | dose independent | rect. | 6 | 10 |
| 719 | 205.43 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 745 | 205.66 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 748 | 205.68 | humidity | 90 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 773 | 205.90 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 920 | 206.07 | humidity | 70 | 10 | > th | dose independent | rect. | 6 | 14 |
| 927 | 206.10 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 17 |
| 942 | 206.22 | humidity | 80 | 10 | < th | dose independent | rect. | 2 | 14 |
| 967 | 206.36 | humidity | 70 | 10 | > th | dose independent | sin | 2 | NA |
| 994 | 206.63 | radiation | 20 | 10 | < th | dose dependent | rect. | 5 | 23 |