BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0155400 Os05g0155400|J065054C19
(193 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G26930.1 | chr5:9479592-9480061 FORWARD LENGTH=121 76 1e-14
AT3G16870.1 | chr3:5763752-5764576 REVERSE LENGTH=191 70 7e-13
AT4G16141.1 | chr4:9131872-9132893 REVERSE LENGTH=198 70 8e-13
AT5G49300.1 | chr5:19984849-19985475 REVERSE LENGTH=140 69 2e-12
AT3G06740.1 | chr3:2126658-2127265 FORWARD LENGTH=150 67 8e-12
AT2G18380.1 | chr2:7982868-7984017 REVERSE LENGTH=209 60 5e-10
AT5G56860.1 | chr5:22989630-22991351 REVERSE LENGTH=399 60 8e-10
AT4G36620.1 | chr4:17268906-17269662 REVERSE LENGTH=212 60 9e-10
AT3G50870.1 | chr3:18911112-18912369 FORWARD LENGTH=296 59 2e-09
AT4G26150.1 | chr4:13253210-13254659 FORWARD LENGTH=353 57 6e-09
AT3G24050.1 | chr3:8686060-8687462 FORWARD LENGTH=275 57 7e-09
AT4G32890.1 | chr4:15875598-15876615 FORWARD LENGTH=309 56 1e-08
AT1G08010.1 | chr1:2486202-2487402 REVERSE LENGTH=304 56 1e-08
AT1G08000.1 | chr1:2483460-2484564 REVERSE LENGTH=309 56 1e-08
AT4G36240.1 | chr4:17147376-17148211 REVERSE LENGTH=239 56 1e-08
AT3G20750.1 | chr3:7255016-7256140 FORWARD LENGTH=209 56 1e-08
AT4G34680.1 | chr4:16553700-16554610 FORWARD LENGTH=270 55 3e-08
AT5G25830.1 | chr5:9004398-9005502 REVERSE LENGTH=332 55 3e-08
AT3G54810.2 | chr3:20296957-20298236 FORWARD LENGTH=323 55 3e-08
AT3G60530.1 | chr3:22373348-22374147 FORWARD LENGTH=241 55 3e-08
AT2G45050.1 | chr2:18582958-18583845 FORWARD LENGTH=265 54 4e-08
AT2G28340.1 | chr2:12103672-12106172 FORWARD LENGTH=292 53 8e-08
AT5G66320.1 | chr5:26496208-26497309 REVERSE LENGTH=340 53 1e-07
AT3G51080.1 | chr3:18973639-18974668 FORWARD LENGTH=313 52 2e-07
AT3G45170.1 | chr3:16537538-16538232 FORWARD LENGTH=205 50 9e-07
AT5G47140.1 | chr5:19145108-19147303 FORWARD LENGTH=471 49 2e-06
>AT5G26930.1 | chr5:9479592-9480061 FORWARD LENGTH=121
Length = 120
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQEL 106
RCC EC T TPMWRGGPTGP+SLCNACGIR+RK+RR EL
Sbjct: 26 RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSEL 65
>AT3G16870.1 | chr3:5763752-5764576 REVERSE LENGTH=191
Length = 190
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 66 RRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQELGL 108
+R CV+CG TP+WRGGP GP+SLCNACGI+ RKKR+ LG+
Sbjct: 41 KRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGM 83
>AT4G16141.1 | chr4:9131872-9132893 REVERSE LENGTH=198
Length = 197
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 66 RRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQELGL 108
++ CV+CG + TP+WRGGP GP+SLCNACGI+ RKKR+ LG+
Sbjct: 36 KKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGI 78
>AT5G49300.1 | chr5:19984849-19985475 REVERSE LENGTH=140
Length = 139
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 66 RRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRR 103
++ C +CG + TP+WRGGP GP+SLCNACGIR RKKRR
Sbjct: 35 KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRR 72
>AT3G06740.1 | chr3:2126658-2127265 FORWARD LENGTH=150
Length = 149
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 31/38 (81%)
Query: 66 RRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRR 103
++ C CG + TP+WRGGP GP+SLCNACGIR RKKRR
Sbjct: 40 KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRR 77
>AT2G18380.1 | chr2:7982868-7984017 REVERSE LENGTH=209
Length = 208
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRR 103
R C C T+TP+WR GP GP+SLCNACGIR++K+ R
Sbjct: 92 RRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 128
>AT5G56860.1 | chr5:22989630-22991351 REVERSE LENGTH=399
Length = 398
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRK 100
R C +C T TP+WR GP GP+SLCNACGIR RK
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRK 263
>AT4G36620.1 | chr4:17268906-17269662 REVERSE LENGTH=212
Length = 211
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQ 104
R C C T+TP+WR GP GP+SLCNACGIR++K+ R+
Sbjct: 75 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERR 112
>AT3G50870.1 | chr3:18911112-18912369 FORWARD LENGTH=296
Length = 295
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 69 CVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRR 103
C C T+TP+WR GP GP+SLCNACGIR++K+ R
Sbjct: 154 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 188
>AT4G26150.1 | chr4:13253210-13254659 FORWARD LENGTH=353
Length = 352
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 24/31 (77%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIR 97
R C +C T TP+WR GP GP+SLCNACGIR
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGIR 229
>AT3G24050.1 | chr3:8686060-8687462 FORWARD LENGTH=275
Length = 274
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
R C CGA TP WR GP GP++LCNACG+RY+ R
Sbjct: 194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGR 229
>AT4G32890.1 | chr4:15875598-15876615 FORWARD LENGTH=309
Length = 308
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 65 GRRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
G R C+ C TP WR GP GP++LCNACG+RY+ R
Sbjct: 195 GGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGR 232
>AT1G08010.1 | chr1:2486202-2487402 REVERSE LENGTH=304
Length = 303
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
R C C T TP WR GP+GP++LCNACG+R+R R
Sbjct: 220 RKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGR 255
>AT1G08000.1 | chr1:2483460-2484564 REVERSE LENGTH=309
Length = 308
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
R C C TTP WR GP+GP++LCNACG+R++ R
Sbjct: 218 RICTHCETITTPQWRQGPSGPKTLCNACGVRFKSGR 253
>AT4G36240.1 | chr4:17147376-17148211 REVERSE LENGTH=239
Length = 238
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 66 RRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
RRCC CG TP WR GP G ++LCNACG+R++ R
Sbjct: 163 RRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGR 199
>AT3G20750.1 | chr3:7255016-7256140 FORWARD LENGTH=209
Length = 208
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 70 VECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQE 105
+ C A TPMWR GP GP+SLCNACGI++RK+ ++
Sbjct: 162 MNCNALNTPMWRRGPLGPKSLCNACGIKFRKEEERK 197
>AT4G34680.1 | chr4:16553700-16554610 FORWARD LENGTH=270
Length = 269
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 66 RRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
+R C CG TP WR GP GP++LCNACG+R++ R
Sbjct: 179 QRRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 215
>AT5G25830.1 | chr5:9004398-9005502 REVERSE LENGTH=332
Length = 331
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 66 RRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
R C+ C TP WR GP GP++LCNACG+RY+ R
Sbjct: 218 ERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGR 254
>AT3G54810.2 | chr3:20296957-20298236 FORWARD LENGTH=323
Length = 322
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
R C+ C T TP WR GP GP++LCNACG+RY+ R
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 264
>AT3G60530.1 | chr3:22373348-22374147 FORWARD LENGTH=241
Length = 240
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 65 GRRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
G R C C + TP WR GP GP++LCNACG+RY+ R
Sbjct: 156 GARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGR 193
>AT2G45050.1 | chr2:18582958-18583845 FORWARD LENGTH=265
Length = 264
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 65 GRRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
G R C C + TP WR GP GP++LCNACG+R++ R
Sbjct: 177 GMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGR 214
>AT2G28340.1 | chr2:12103672-12106172 FORWARD LENGTH=292
Length = 291
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 69 CVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
C C TTTP WR GP G ++LCNACGIR+R R
Sbjct: 193 CTHCETTTTPQWREGPNGRKTLCNACGIRFRSGR 226
>AT5G66320.1 | chr5:26496208-26497309 REVERSE LENGTH=340
Length = 339
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 66 RRCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
+R C CG TP WR GP G ++LCNACG+RY+ R
Sbjct: 248 QRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGR 284
>AT3G51080.1 | chr3:18973639-18974668 FORWARD LENGTH=313
Length = 312
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
R C CG TP WR GP G ++LCNACG+RY+ R
Sbjct: 221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGR 256
>AT3G45170.1 | chr3:16537538-16538232 FORWARD LENGTH=205
Length = 204
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 67 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKR 102
+ C CG TP+WR GP G +LCNACG+RYR R
Sbjct: 115 KSCSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGR 150
>AT5G47140.1 | chr5:19145108-19147303 FORWARD LENGTH=471
Length = 470
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 69 CVECGATTTPMWRGGPTGPRSLCNACGIRYRKK 101
C CG T+TP+WR GP LCNACG R+R K
Sbjct: 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTK 39
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,326,332
Number of extensions: 61152
Number of successful extensions: 114
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 26
Length of query: 193
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 100
Effective length of database: 8,556,881
Effective search space: 855688100
Effective search space used: 855688100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)