BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0153600 Os05g0153600|Os05g0153600
(313 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0153600 FAR1 domain containing protein 610 e-175
Os05g0128700 177 9e-45
Os12g0505900 161 5e-40
Os03g0666200 Pleckstrin homology-type domain containing pro... 77 2e-14
Os03g0164400 FAR1 domain containing protein 72 4e-13
Os11g0150900 69 3e-12
Os02g0604600 66 3e-11
>Os05g0153600 FAR1 domain containing protein
Length = 313
Score = 610 bits (1574), Expect = e-175, Method: Compositional matrix adjust.
Identities = 297/313 (94%), Positives = 297/313 (94%)
Query: 1 MGEFRGTGNEDDAKCGTGNEDDAKCGKDCSTDSYMDNSSNTNDDDYAECSLGDHNKSKPN 60
MGEFRGTGNEDDAKCGTGNEDDAKCGKDCSTDSYMDNSSNTNDDDYAECSLGDHNKSKPN
Sbjct: 1 MGEFRGTGNEDDAKCGTGNEDDAKCGKDCSTDSYMDNSSNTNDDDYAECSLGDHNKSKPN 60
Query: 61 DPSSSHNVFHSVEEDNVALDEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREK 120
DPSSSHNVFHSVEEDNVALDEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREK
Sbjct: 61 DPSSSHNVFHSVEEDNVALDEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREK 120
Query: 121 RVGAIEYRRFVCSKEGIRDPSLVKPEDREFALQEDFEYGVYDDQTNMVEQIIQLEIRRSS 180
RVGAIEYRRFVCSKEGIRDPSLVKPEDREFALQEDFEYGVYDDQTNMVEQIIQLEIRRSS
Sbjct: 121 RVGAIEYRRFVCSKEGIRDPSLVKPEDREFALQEDFEYGVYDDQTNMVEQIIQLEIRRSS 180
Query: 181 GRMSLNGIKKLNLLRASKQIHATEHTWLIICRQDLALIESLKIVVILYDINLHCLETLQV 240
GRMSLNGIKKLNLLRASKQIHATEHTWLIICRQDLALIESLKIVVILYDINLHCLETLQV
Sbjct: 181 GRMSLNGIKKLNLLRASKQIHATEHTWLIICRQDLALIESLKIVVILYDINLHCLETLQV 240
Query: 241 KDGELQNLANNIRARDATIKEIADKLXXXXXXXXXXXXXXXXMDEHRRLLCSEIERLRHY 300
KDGELQNLANNIRARDATIKEIADKL MDEHRRLLCSEIERLRHY
Sbjct: 241 KDGELQNLANNIRARDATIKEIADKLTQTAQAAEAAASATHTMDEHRRLLCSEIERLRHY 300
Query: 301 KQWKDKCNNPCSR 313
KQWKDKCNNPCSR
Sbjct: 301 KQWKDKCNNPCSR 313
>Os05g0128700
Length = 683
Score = 177 bits (449), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 101/157 (64%), Gaps = 53/157 (33%)
Query: 1 MGEFRGTGNEDDAKCGTGNEDDAKCGKDCSTDSYMDNSSNTNDDDYAECSLGDHNKSKPN 60
MGEFRGTGN+DDAK CGKDCSTDSYMDNSSNTNDDDYAECSL
Sbjct: 1 MGEFRGTGNKDDAK----------CGKDCSTDSYMDNSSNTNDDDYAECSL--------- 41
Query: 61 DPSSSHNVFHSVEEDNVALDEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREK 120
TEDECYNFYNSYAKRKGFSVRKDIVRREK
Sbjct: 42 -------------------------------TEDECYNFYNSYAKRKGFSVRKDIVRREK 70
Query: 121 RVGAIEYRRFVCSKEGIRDPSLVKPED---REFALQE 154
RVGAIEYR FVCSKEGIRDPSLVKPED RE AL +
Sbjct: 71 RVGAIEYRHFVCSKEGIRDPSLVKPEDCVRRERALTQ 107
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 80/101 (79%)
Query: 213 QDLALIESLKIVVILYDINLHCLETLQVKDGELQNLANNIRARDATIKEIADKLXXXXXX 272
QDLALIESLKI VILYDINLHCLETL+VKD ELQNLANNIRARDATIK+IADKL
Sbjct: 511 QDLALIESLKIAVILYDINLHCLETLRVKDEELQNLANNIRARDATIKKIADKLTQTAEA 570
Query: 273 XXXXXXXXXXMDEHRRLLCSEIERLRHYKQWKDKCNNPCSR 313
+D HR LLCSEIERLRHYKQWKDK NNPCSR
Sbjct: 571 AEAAASVAHTLDGHRILLCSEIERLRHYKQWKDKWNNPCSR 611
>Os12g0505900
Length = 761
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 91/148 (61%), Gaps = 57/148 (38%)
Query: 1 MGEFRGTGNEDDAKCGTGNEDDAKCGKDCSTDSYMDNSSNTNDDDYAECSLGDHNKSKPN 60
MGEFRGTGN+DDA KCGKDCSTDSYMDNSSNTNDDDYAECSLGDHNKS+PN
Sbjct: 18 MGEFRGTGNKDDA----------KCGKDCSTDSYMDNSSNTNDDDYAECSLGDHNKSQPN 67
Query: 61 DPSSSHNVFHSVEEDNVALDEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREK 120
DPSSSHNVFHSVEEDNVALDE
Sbjct: 68 DPSSSHNVFHSVEEDNVALDE--------------------------------------- 88
Query: 121 RVGAIEYRRFVCSKEGIRDPSLVKPEDR 148
RFVCSKEGIRDPSLVKPEDR
Sbjct: 89 --------RFVCSKEGIRDPSLVKPEDR 108
>Os03g0666200 Pleckstrin homology-type domain containing protein
Length = 500
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 44/64 (68%)
Query: 236 ETLQVKDGELQNLANNIRARDATIKEIADKLXXXXXXXXXXXXXXXXMDEHRRLLCSEIE 295
ETL+VKD ELQNLA +IRARDATIKEIA+KL MDE RRLLCSEIE
Sbjct: 208 ETLRVKDEELQNLAKDIRARDATIKEIANKLTETAEAAEAAASAAHTMDEQRRLLCSEIE 267
Query: 296 RLRH 299
RLR
Sbjct: 268 RLRQ 271
>Os03g0164400 FAR1 domain containing protein
Length = 627
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 41/59 (69%)
Query: 80 DEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREKRVGAIEYRRFVCSKEGIR 138
DEY + M F +EDE + FYN YAK KGFSVRKD RR++ G I ++RF CS+EG R
Sbjct: 6 DEYCKFMAMKFSSEDEGFAFYNQYAKEKGFSVRKDYSRRDRFSGLIFHKRFTCSREGFR 64
>Os11g0150900
Length = 1185
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 71 SVEEDNVALDEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREKRVGAIEYRRF 130
S+EE +EY I+ M F +E + FYN YA+ +GFSVRKD RR++ G I +RRF
Sbjct: 568 SIEEQ----EEYATIIGMKFPSELHGFQFYNKYARERGFSVRKDYCRRDRFSGIIIHRRF 623
Query: 131 VCSKEGIR 138
CS+EG R
Sbjct: 624 TCSREGFR 631
>Os02g0604600
Length = 1541
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 69 FHSVEEDNVALDEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREKRVGAIEYR 128
F S+EE +EY + M F+TE E + FYN YAK KGFSVRK+ +RR+ A+ +R
Sbjct: 700 FISLEEQ----EEYRTMTAMRFKTEKEGFLFYNRYAKEKGFSVRKNYIRRDPITVAVTHR 755
Query: 129 RFVCSKEGIR 138
++ CS+EG R
Sbjct: 756 QYQCSREGHR 765
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,602,756
Number of extensions: 431027
Number of successful extensions: 1356
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1367
Number of HSP's successfully gapped: 9
Length of query: 313
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 212
Effective length of database: 11,762,187
Effective search space: 2493583644
Effective search space used: 2493583644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)