Os03g0666200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pleckstrin homology-type domain containing protein.
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Os03g0666200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pleckstrin homology-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.75 | 0.265 | 9.92 | -0.68 | 0.47 | -1.96 | -0.945 | -1.11 | -0.403 | 10.6 | 27.53 | 88 | -- | -- |
| 33.22 | 0.268 | 9.94 | -0.88 | 0.475 | -1.93 | -0.713 | -- | -0.447 | 10.4 | 28 | 91 | -- | -- |
| 34.97 | 0.275 | 9.93 | -0.795 | 0.473 | -1.98 | -- | -0.613 | -0.43 | 10.4 | 27.82 | 92 | -- | -- |
| 35.28 | 0.277 | 9.94 | -0.899 | 0.485 | -1.91 | -- | -- | -0.444 | 10.5 | 27.92 | 91 | -- | -- |
| 42.79 | 0.306 | 9.95 | -0.866 | -- | -2.14 | -- | -0.416 | -0.468 | -- | 28.08 | 70 | -- | -- |
| 84.72 | 0.432 | 9.84 | -0.406 | 0.894 | -- | -0.403 | -- | -0.0322 | 12.8 | -- | -- | -- | -- |
| 85.4 | 0.433 | 9.84 | -0.421 | 0.895 | -- | -- | -- | -0.034 | 12.9 | -- | -- | -- | -- |
| 42.82 | 0.306 | 9.95 | -0.934 | -- | -2.12 | -- | -- | -0.471 | -- | 28.63 | 22 | -- | -- |
| 53.66 | 0.343 | 9.9 | -- | 0.473 | -1.52 | -- | -- | -0.271 | 11.8 | 27.92 | 91 | -- | -- |
| 135.39 | 0.544 | 9.86 | -0.454 | -- | -- | -- | -- | -0.0508 | -- | -- | -- | -- | -- |
| 90.07 | 0.444 | 9.83 | -- | 0.902 | -- | -- | -- | 0.0129 | 12.9 | -- | -- | -- | -- |
| 64.35 | 0.375 | 9.92 | -- | -- | -1.86 | -- | -- | -0.311 | -- | 29.36 | 17 | -- | -- |
| 140.83 | 0.554 | 9.85 | -- | -- | -- | -- | -- | -0.000397 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 2 | 33.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 3 | 33.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 4 | 33.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 5 | 33.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 6 | 33.61 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 8 | 33.63 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 9 | 33.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 14 | 33.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 19 | 34.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 20 | 34.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 27 | 34.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 33 | 34.91 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 38 | 35.14 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 44 | 35.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 50 | 35.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 61 | 35.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 66 | 35.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 70 | 35.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 95 | 36.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 111 | 36.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 174 | 37.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 185 | 37.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 199 | 37.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 365 | 39.91 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 395 | 40.35 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 420 | 40.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 456 | 41.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 487 | 41.31 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 515 | 41.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 20 |
| 596 | 42.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 673 | 42.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 15 |
| 774 | 43.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 17 |
| 864 | 43.35 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 906 | 43.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |