BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0666200 Os03g0666200|AK102364
(500 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G30880.1 | chr2:13142926-13145718 REVERSE LENGTH=505 497 e-141
>AT2G30880.1 | chr2:13142926-13145718 REVERSE LENGTH=505
Length = 504
Score = 497 bits (1279), Expect = e-141, Method: Compositional matrix adjust.
Identities = 273/494 (55%), Positives = 345/494 (69%), Gaps = 12/494 (2%)
Query: 1 MATNGSSPRARE-TESSLEKVKRQLSSGSGRYLLQGPLLKRSETLRKWNERWVILDPTSG 59
MA+NG+SPR + TE+SL+K+KRQL+SGSGR LLQGPL KRSETLRKWNERWVILDPT+G
Sbjct: 1 MASNGASPRIVDATENSLDKIKRQLASGSGRNLLQGPLFKRSETLRKWNERWVILDPTTG 60
Query: 60 KMEYKIRRNETAIKGTIIFDASSTITLSPVNFQGMPKYDGCCFYIGTPQKKDYFLCAETP 119
KMEYK RRNE IKGTI+FD +STI++SPVNFQG+PKY+GCC YIGTPQKKDYFLCAETP
Sbjct: 61 KMEYKTRRNEPTIKGTILFDENSTISISPVNFQGLPKYNGCCIYIGTPQKKDYFLCAETP 120
Query: 120 GAAKAWVSTLLATQLVLQAHKEAVNSLAGNGSPXXXXXXXXXXXXXXXXXXXXXKEIEAA 179
GAAKAWV+TL ATQLVL+AHKEAV SL+G+GS +EI+AA
Sbjct: 121 GAAKAWVTTLHATQLVLKAHKEAVESLSGSGS-ATLGTVATVVAAANSTALECSREIQAA 179
Query: 180 MKVSMRAALGLGANNPKEGQLDDLTIMKETLRVKDEELQNLAKDIRARDATIKEIANKLX 239
M++S+R AL + N P +G LDDLTIMKETLRVKDEEL NLA+++R+RD+ IKEIA+KL
Sbjct: 180 MQISLRNALKITPNKPIDGPLDDLTIMKETLRVKDEELHNLARELRSRDSMIKEIADKLS 239
Query: 240 XXXXXXXXXXXXXXXMDEQRRLLCSEIERLRQAMERQMEQSMLKLRQSEEKVISLSKEKD 299
MDEQR+++C E ERL +RQ E + LKL++ EEK +LSKEKD
Sbjct: 240 ETAEAAVAAASAAHTMDEQRKIVCVEFERLTTDSQRQQEATKLKLKELEEKTFTLSKEKD 299
Query: 300 QLLKERDAALQEAHMWRTELGKAREQAVIQEATIARADXXXXXXXXXXXXXXXXXXXXLH 359
QL+KERDAALQEAHMWR+ELGKARE+ VI E + RA+
Sbjct: 300 QLVKERDAALQEAHMWRSELGKARERVVILEGAVVRAEEKVRVAEASGEAKSKEASQREA 359
Query: 360 AVXXXXXXXXSLVGILQSQVQREQSSTKQVCEERSESCSGTDNSPPLTKHVDASDDDVDK 419
+ V +LQ+Q+QR+Q TKQVCEE++ES +G + S P+TK ++ +VDK
Sbjct: 360 TAWTEKQELLAYVNMLQTQLQRQQLETKQVCEEKTESTNG-EASLPMTKE---TEKNVDK 415
Query: 420 ACVSDSRSVLVSNDNTEVQLAVDGV--DIRPIGDAEWGSFQQSEALIADVREVSPESE-- 475
AC+S SR+ + +N V ++ + V P+G+ EW Q +EA ++DVRE+S E+E
Sbjct: 416 ACLSISRTASIPGENV-VHMSEEQVVNAQPPVGENEWNDIQATEARVSDVREISAETERD 474
Query: 476 -GGSLDIPVVNPPP 488
SLDIPVV+P P
Sbjct: 475 RRNSLDIPVVSPEP 488
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.127 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,084,107
Number of extensions: 336514
Number of successful extensions: 1274
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1268
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 397
Effective length of database: 8,282,721
Effective search space: 3288240237
Effective search space used: 3288240237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)