Os03g0164400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAR1 domain containing protein.
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Os03g0164400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAR1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.14 | 0.231 | 9.01 | -0.87 | 0.173 | -1.87 | 0.136 | 8.72 | -0.337 | 17.7 | 999.7 | 101 | -- | -- |
| 25.18 | 0.236 | 8.92 | -0.329 | 0.171 | -0.308 | 0.154 | -- | -0.337 | 18.1 | 999.7 | 101 | -- | -- |
| 24.11 | 0.23 | 9.02 | -0.911 | 0.172 | -1.9 | -- | 9 | -0.336 | 17.6 | 999.7 | 101 | -- | -- |
| 25.09 | 0.233 | 8.92 | -0.33 | 0.173 | -0.339 | -- | -- | -0.337 | 17.7 | 999.5 | 125 | -- | -- |
| 25.65 | 0.237 | 9.02 | -0.912 | -- | -1.89 | -- | 8.93 | -0.34 | -- | 999.7 | 128 | -- | -- |
| 27.71 | 0.247 | 8.92 | -0.276 | 0.174 | -- | 0.143 | -- | -0.357 | 17.9 | -- | -- | -- | -- |
| 27.76 | 0.247 | 8.92 | -0.277 | 0.175 | -- | -- | -- | -0.356 | 17.7 | -- | -- | -- | -- |
| 26.55 | 0.24 | 8.91 | -0.339 | -- | -0.338 | -- | -- | -0.333 | -- | 1000 | 195 | -- | -- |
| 27.89 | 0.246 | 8.91 | -- | 0.178 | -0.282 | -- | -- | -0.304 | 17.6 | 999.5 | 124 | -- | -- |
| 29.34 | 0.253 | 8.92 | -0.282 | -- | -- | -- | -- | -0.361 | -- | -- | -- | -- | -- |
| 29.77 | 0.255 | 8.91 | -- | 0.179 | -- | -- | -- | -0.326 | 17.6 | -- | -- | -- | -- |
| 29.52 | 0.253 | 8.91 | -- | -- | -0.277 | -- | -- | -0.312 | -- | 1000 | 224 | -- | -- |
| 31.45 | 0.262 | 8.91 | -- | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.03 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 23.26 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 19 | 23.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 24 | 23.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 28 | 23.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 31 | 23.50 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 34 | 23.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 35 | 23.51 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 38 | 23.52 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 40 | 23.54 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 43 | 23.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 53 | 23.61 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 54 | 23.61 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 59 | 23.62 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 63 | 23.65 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 69 | 23.68 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 71 | 23.68 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 74 | 23.68 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 75 | 23.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 81 | 23.70 | wind | 5 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 84 | 23.70 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 87 | 23.70 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 92 | 23.71 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 103 | 23.72 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 113 | 23.73 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 116 | 23.73 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 119 | 23.74 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 157 | 23.76 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 16 | 23 |
| 158 | 23.76 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 210 | 23.81 | wind | 5 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 214 | 23.82 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 217 | 23.82 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 230 | 23.84 | wind | 7 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 232 | 23.84 | wind | 5 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 260 | 23.87 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 274 | 23.88 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 309 | 23.90 | wind | 7 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 334 | 23.91 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 340 | 23.92 | wind | 5 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 343 | 23.92 | wind | 9 | 43200 | > th | dose dependent | sin | 11 | NA |
| 344 | 23.92 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 386 | 23.94 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 400 | 23.95 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 469 | 23.97 | temperature | 25 | 270 | > th | dose dependent | sin | 11 | NA |
| 470 | 23.97 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 561 | 24.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 8 |
| 608 | 24.06 | wind | 9 | 43200 | > th | dose independent | sin | 10 | NA |
| 611 | 24.06 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 622 | 24.07 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 656 | 24.08 | temperature | 15 | 4320 | > th | dose dependent | sin | 16 | NA |
| 691 | 24.10 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 23 |
| 715 | 24.11 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 23 | 22 |
| 720 | 24.11 | wind | 5 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 735 | 24.12 | wind | 9 | 43200 | < th | dose independent | sin | 10 | NA |
| 786 | 24.14 | wind | 5 | 14400 | > th | dose independent | sin | 10 | NA |
| 788 | 24.14 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 798 | 24.14 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 810 | 24.14 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 837 | 24.16 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 849 | 24.16 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 22 | 23 |
| 871 | 24.17 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 872 | 24.17 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 880 | 24.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 889 | 24.17 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 950 | 24.19 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 9 | 23 |
| 953 | 24.19 | temperature | 30 | 4320 | < th | dose dependent | sin | 15 | NA |
| 955 | 24.19 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 977 | 24.20 | atmosphere | 1000 | 90 | > th | dose independent | no | NA | NA |