BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0151000 Os05g0151000|Os05g0151000
(1834 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0151000 Similar to RNA polymerase II largest subunit (... 3256 0.0
Os04g0492300 Similar to DNA-directed RNA polymerase II larg... 596 e-170
AK110219 155 3e-37
Os02g0152800 RNA polymerase Rpb1, domain 1 containing protein 147 7e-35
Os01g0965000 134 6e-31
Os11g0107800 134 9e-31
Os06g0612200 RNA polymerase Rpb1, domain 5 containing protein 79 3e-14
>Os05g0151000 Similar to RNA polymerase II largest subunit (Fragment)
Length = 1834
Score = 3256 bits (8441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1567/1607 (97%), Positives = 1567/1607 (97%)
Query: 1 MDAARFPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGT 60
MDAARFPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGT
Sbjct: 1 MDAARFPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGT 60
Query: 61 IDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDI 120
IDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDI
Sbjct: 61 IDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDI 120
Query: 121 KFKQALKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNIT 180
KFKQALKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNIT
Sbjct: 121 KFKQALKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNIT 180
Query: 181 VDGMKMVAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPKFA 240
VDGMKMVAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPKFA
Sbjct: 181 VDGMKMVAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPKFA 240
Query: 241 RPDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 300
RPDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 241 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 300
Query: 301 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
Query: 361 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 361 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
Query: 421 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 421 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
Query: 481 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 540
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 481 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 540
Query: 541 TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQI 600
TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQI
Sbjct: 541 TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQI 600
Query: 601 NLIRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 660
NLIRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 601 NLIRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 660
Query: 661 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQ 720
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQ
Sbjct: 661 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQ 720
Query: 721 LEAEAGRTTMESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQM 780
LEAEAGRTTMESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQM
Sbjct: 721 LEAEAGRTTMESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQM 780
Query: 781 TACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
TACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781 TACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
Query: 841 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQ 900
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQ
Sbjct: 841 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQ 900
Query: 901 KLDSLKMKKAEFDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRF 960
KLDSLKMKKAEFDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRF
Sbjct: 901 KLDSLKMKKAEFDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRF 960
Query: 961 QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVV 1020
QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVV
Sbjct: 961 QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVV 1020
Query: 1021 PGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1080
PGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1080
Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHL 1140
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHL 1140
Query: 1141 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDED 1200
KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDED
Sbjct: 1141 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDED 1200
Query: 1201 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1260
IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI
Sbjct: 1201 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1260
Query: 1261 TNDEAQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFK 1320
TNDEAQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFK
Sbjct: 1261 TNDEAQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFK 1320
Query: 1321 TEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1380
TEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD
Sbjct: 1321 TEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1380
Query: 1381 GSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1440
GSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD
Sbjct: 1381 GSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1440
Query: 1441 PLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISG 1500
PLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISG
Sbjct: 1441 PLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISG 1500
Query: 1501 TPYHQGMMSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVXXXXXXXXXXXXXXXXXXX 1560
TPYHQGMMSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPV
Sbjct: 1501 TPYHQGMMSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPP 1560
Query: 1561 VCXXXXXXXXXXXXYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1607
VC YNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT
Sbjct: 1561 VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1607
>Os04g0492300 Similar to DNA-directed RNA polymerase II largest chain
Length = 1383
Score = 596 bits (1536), Expect = e-170, Method: Compositional matrix adjust.
Identities = 349/932 (37%), Positives = 508/932 (54%), Gaps = 73/932 (7%)
Query: 15 KVEAVQFGVLSPDEIRQMSVVHIEHAETM-EKGKPKPGGLSDPRMGTIDRKIKCETCMAG 73
++++++F + S +E+RQ + V + ++ + KP P GL D RMG ++ +C TC
Sbjct: 23 RIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPNGLLDTRMGAANKLGECSTCHGS 82
Query: 74 MAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQALKIRNPKN 133
AECPGHFG+L+LA P+F++GF +L +++C+C +CS++L E D + + K+RNPK
Sbjct: 83 FAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLMEKD-RLEFLKKMRNPKA 141
Query: 134 K-------LKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNITVDGMKM 186
+K++ D CK L G + V K+G G +
Sbjct: 142 DPLQKSAIMKKVRDKCK----------LSRCPWCGFINGVAKKGRAG------------L 179
Query: 187 VAEYKAPKKKNDDQEQLPEPVDRKQ---ILSAER------VLNVLKHISDEDCLLLGLNP 237
+ + K + E+L + + K+ +SA R VL++ K ++DEDC LL L
Sbjct: 180 IILHDCSKTLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGD 239
Query: 238 KFARPDWMILQVLXXXXXXXXXSVMMDTSSRS-EDDLTHQLAMIIRHNENLRRQERNGAP 296
RP+ +I+ + SV + S ED +T L I N L+ + G
Sbjct: 240 ---RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQ 296
Query: 297 AHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 356
+ Q LQ + Y +++ P P + R + RLK K GR RGNL GKR
Sbjct: 297 FMKCFDCWQHLQLQVVEYINSDAPSLPESQHRG------LVQRLKGKTGRFRGNLSGKRT 350
Query: 357 DFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 416
+++ RTVI+PDPN+ I E+ +P +A LTYPE V+ YNIE+L++ + GPH PG A
Sbjct: 351 EYTGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPG---A 407
Query: 417 KYIIREDGQRLDLRYV-KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 475
+II+ DG +L L+Y ++ + + L+ G VERHL DGD VLFNRQPSLH+MSIM HR +
Sbjct: 408 NFIIQPDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRAR 467
Query: 476 IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 535
IMP+ T R N SV +PYNADFDGDEMN+HVPQ+ E R E L LM V + +P++ ++
Sbjct: 468 IMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILV 527
Query: 536 GIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDF--DGKVPAPAILKPRPIWTGKQVFN 593
QD L +T++D ++ F + + D + +P PA++KP +WTGKQ+F+
Sbjct: 528 ASTQDFLTSSFLVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFS 587
Query: 594 LIIPKQ------INL-----IRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLG 642
+++ +NL I + S E + P D V ELLSG + K TLG
Sbjct: 588 VLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLG 647
Query: 643 TSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINET 701
+ + + AA + ++ +GFSIG+ D +
Sbjct: 648 NGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMK 707
Query: 702 ISKAKNDVKKLIKQFRDNQLEAEAGRTTMESFENRVNEVLNKARDVAGSSAEKSLSESNN 761
I D LI + L + G ++ E + VLN+ R+ AG +L N+
Sbjct: 708 IDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNS 767
Query: 762 LKAMATAGSKGTFINISQMTACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVEN 821
M+ GSKG+ INISQM ACVGQQ+V G+R P GF +RTLPHF N P ++GFV N
Sbjct: 768 PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVAN 827
Query: 822 SYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD 881
S+ GLT EFFFH MGGREGL+DTAVKT+ETGY+ RRL+K +ED+ V YD TVRN+ G
Sbjct: 828 SFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGG 887
Query: 882 VIQFLYGEDGMDAIWIESQ-----KLDSLKMK 908
++QFLYG+DGMD +E + LD L MK
Sbjct: 888 IVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMK 919
Score = 197 bits (500), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 158/510 (30%), Positives = 246/510 (48%), Gaps = 85/510 (16%)
Query: 977 PVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAI-DKLQERLKVVPGDDDISIEAQKNAT 1035
P+NL +L T R + + P EI+ + DKL E DD S + ++ T
Sbjct: 910 PLNLDQLFMKVMAT--CPQRGQNTLSPGEILQILNDKLSEH--DASSDDGCSEKFKQLLT 965
Query: 1036 LFFNILLRSTFASKRVL--------KEYRLTKEAFEWVIGEIESRFLQSL---------- 1077
F ++ +++R L + + +E+ I I + LQ
Sbjct: 966 YFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDTCLSRYHL 1025
Query: 1078 --VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPS 1135
+ G IG + AQSIGEP TQMTL TFH+AGV++ NVTLGVPR++EIIN AK I TP
Sbjct: 1026 KKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPI 1085
Query: 1136 LSVHLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYE 1195
++ L E K A+ V+ ++E L V A +I +++ D + +++ +
Sbjct: 1086 ITAELLSE--KDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRIEALHM 1143
Query: 1196 MPDEDIDPDKISPWLL---RIELNREMM--VDKKLSMADIAEKINHEFDDDLSCIFNDDN 1250
I D + +L +I+L E + +DK
Sbjct: 1144 ----GISADSVQLSILNHPKIKLKSEHVRVIDKS-------------------------- 1173
Query: 1251 ADKLILRVRITNDEAQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNV 1310
++RI K ++ E L ++S ML ++ ++GIP + + I E
Sbjct: 1174 ------KLRIYPAGIDKSKLLYE-------LHHLKS-MLPKVIVKGIPTVERAVISETG- 1218
Query: 1311 NKFEDNDGFKTEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALL 1370
E+ND K + L EG NLLAVM VDA +T SNH++EV LGIEA RR+++
Sbjct: 1219 ---EEND-----KRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSII 1270
Query: 1371 DELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDIL 1430
DE++ + G ++ RH+ +L D MTY+G ++ ITR+GI + + LM SFE+T + L
Sbjct: 1271 DEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHL 1330
Query: 1431 LDAAVYAESDPLRGVSENIMLGQLAPIGTG 1460
+A+ D + GVSE I++G +GTG
Sbjct: 1331 FNASYSGREDQIEGVSECIIMGIPMQLGTG 1360
>AK110219
Length = 734
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 159/306 (51%), Gaps = 45/306 (14%)
Query: 831 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 890
++FFH M GREGLIDTAVKTS +GY+QR L+K +E + ++YD TVRN+ G ++QF YGED
Sbjct: 6 KYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVHIQYDNTVRNADGSILQFAYGED 65
Query: 891 GMDAIWIESQKLDSLKMKKAEFDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEA 950
+D +S+ L A F EN+ Y D K + E V EA
Sbjct: 66 ALDTT--KSKYLGQFDFTAANF----------ENYNKRY-------DPKQLGE---VVEA 103
Query: 951 EVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIV-DA 1009
E L A+ + + + M N + + + ++ + +P +++ D
Sbjct: 104 E---LAAEHMKKALKKPHKYEPVLSM-YNPSTHFGSMSEKYAKEIEAYIEKNPSKLLADK 159
Query: 1010 IDKLQERLKVVPGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEI 1069
K ++R GD D + + + A K + +L EAF + +
Sbjct: 160 KKKSKKRKSEAAGDADGNNDGK--------------VAEKLRFAKEKLGVEAFRAMCKVL 205
Query: 1070 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA- 1128
R LV PGE +G +AAQ +GEP+TQMTLNTFH+AG A NVTLG+PRLREI+ A
Sbjct: 206 YHR---GLVDPGEAVGLLAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTAS 262
Query: 1129 KNIKTP 1134
+NIKTP
Sbjct: 263 QNIKTP 268
>Os02g0152800 RNA polymerase Rpb1, domain 1 containing protein
Length = 488
Score = 147 bits (371), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 223/526 (42%), Gaps = 55/526 (10%)
Query: 10 PAEVAKVEAVQFGVLSPDEIRQMSV--VHIEHAETMEKGKPKPGGLSDPRMGTIDRKIKC 67
P +++++ + + DEIR S+ + H P L +P +G KC
Sbjct: 9 PVAEGAIKSIKLSLSTEDEIRTYSINDCPVTH----------PSQLGNPFLGLPLETGKC 58
Query: 68 ETCMAGM-AECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQAL 126
E+C A +C GHFG++EL P++H + + I+ VC C ++ +
Sbjct: 59 ESCGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRV----------KKG 108
Query: 127 KIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNITVDGMKM 186
K++ + K +C C L ++E + D GA + + + K
Sbjct: 109 KVKQTEGKDNTSALSCY---YCRDLPALSLKEIKTAD---------GAFRLELKMPPRKF 156
Query: 187 VAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPKFARPDWMI 246
+ E D + L E LN+LK I +E L A+ + +
Sbjct: 157 MTE--GSWNFLDKYGFHHGGTSHCRTLLPEEALNILKKIPEETKRKLAARGYIAQSGY-V 213
Query: 247 LQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQL 306
++ L D S D++ L + ++ R G+P E
Sbjct: 214 MKYLPVPPNCLYIPEFTDGQSIMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESC 273
Query: 307 -LQFHIATYFDNELPGQPRATQRSGR--PIKSICSRLKAKE--GRIRGNLMGKRVDFSAR 361
LQ IA Y L G R Q + + I + S L K+ ++R + K FS+R
Sbjct: 274 DLQLSIAQYI--HLRGTTRGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSR 331
Query: 362 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 421
+V+T DP I +D +G+P +A +T+ E VT N+ RL+E+V+ G +
Sbjct: 332 SVLTGDPYIGVDVIGLPSEVAKRITFEEQVTDINLNRLQEIVDKG----------LCLTY 381
Query: 422 EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 481
DGQ V L++G + R + DGD V NR PS HK S+ R+ + T
Sbjct: 382 RDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFRVYVHEDHT 441
Query: 482 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 527
++N + +P+ ADFDGD ++++ PQS +AE LEL V K + S
Sbjct: 442 VKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTS 487
>Os01g0965000
Length = 1570
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 209/871 (23%), Positives = 334/871 (38%), Gaps = 177/871 (20%)
Query: 53 LSDPRMGTIDRKIKCETCMA-GMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCS 111
L++P +G + C++C + + EC GHF +EL P+FH + + I+ +C C
Sbjct: 55 LNNPYLGLPLQVGSCQSCGSNAIEECEGHFRFIELPMPIFHPSHVTELSQILNLICLRC- 113
Query: 112 KILADEDDIKFKQALKIRN-PKNKLK-RIYDACKNRKICAGGDNLDVQEQQGTDDPVKKR 169
LKI+N K+ LK + +C + C L V E VKK
Sbjct: 114 --------------LKIKNRKKSTLKGSKFTSCSH---CQELPPLCVAE-------VKKS 149
Query: 170 GGCGAQQPNITVDGMKMVAEYKAPKKKN---------DDQEQLPEPVDRKQILSAERVLN 220
G G+ E +AP KK D + L E V N
Sbjct: 150 NG---------ARGL----ELRAPIKKELEEGFWSFLDQFGSCTRGTSHCRPLLPEEVQN 196
Query: 221 VLKHISDEDCLLLGLNPKFARPDWMILQVLXXXXXXXXXSVMMDTSSRS-EDDLTHQLAM 279
++K I +E L + + D IL L S ++D ++ S T+ L
Sbjct: 197 IIKKIPEETRRWLSVR-GYIPQDGFILSYLCVPPNCLRVSNVLDGNTFSCSGTSTNLLRK 255
Query: 280 IIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYF----------DNELPGQPRATQRS 329
+R + +R R G+ + + A LQ +A Y D+ QP A Q
Sbjct: 256 ALRKIQQIR-GSRIGSSNIQVDQVADDLQVDVANYINLGGTTKGHGDDTFTSQPTAMQW- 313
Query: 330 GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPE 389
+ +++ + K FS+R VIT DP I ++ +GVP +A ++ E
Sbjct: 314 --------------KQKMKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSVEE 359
Query: 390 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQH--LELGYKVE 447
VT +NI +L++++ G + + G+ + +H L++G V
Sbjct: 360 KVTDHNIAQLQDMMNKGLCLTYTDANSITYSLDAGK-------DNPNKKHTILKVGEIVN 412
Query: 448 RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 507
R + DGD V NR PS K S+ +++ T ++N + P ADFDGD + + P+
Sbjct: 413 RRVFDGDIVFLNRPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDGDCVQIFYPR 472
Query: 508 SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD-TLIEKDVFMNILMW 566
S RAE EL V K +VS + + D L + + R+ + E + N +
Sbjct: 473 SLSARAEAKELYTVDKQLVSSHNGKLNFQFKNDFSLALKIMCGREYSEREANQITNAMF- 531
Query: 567 WEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSGWHSEAETRFITPGDTMVRI 626
G P ++ P WT Q+ ++ IT D + R
Sbjct: 532 ---SSGMYPQKPLIGG-PYWTFPQIL-----------------ETTKSNAITLADHLDRE 570
Query: 627 EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG 686
G L +GT L T GP A +FL Q L+ LL + FSI +G
Sbjct: 571 SVGALATGTTISSILSTK------------GPREATEFLNLLQPLLMESLLIDCFSINLG 618
Query: 687 DTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAEAGRTTMESFENRVNEVLNKARD 746
D + +E I ++N LE R + F
Sbjct: 619 DFTVPSPILEAI------------------QNNPLELNKYREPIMDF------------- 647
Query: 747 VAGSSAEKSL----SESNNLKAMATAG-------SKGTFINISQMTACVGQQNVEGKRIP 795
+ SSA L S+SN K + G G + + C+ +
Sbjct: 648 ITHSSAIGLLVDPKSDSNMNKVVEQLGFLGPQLQHNGRLYSSRLVEDCLSK----SLHRC 703
Query: 796 FGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 855
G TN P +YG V +S GL P E H++ RE ++ + E G
Sbjct: 704 CGSTNCCNP---LEEYGT-----VRSSIYHGLNPYEALLHSICEREKIMRASKGLVEPGS 755
Query: 856 IQRRLVKAMEDIMVKYDGTVRNSLGD-VIQF 885
+ + ++ + D+ YDG++R S G+ V+QF
Sbjct: 756 LFKNMMSRLRDVTACYDGSIRTSSGNLVLQF 786
>Os11g0107800
Length = 362
Score = 134 bits (336), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 62/65 (95%)
Query: 446 VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 505
VERHL+DGDFVLFNRQPSLHKM IMGHRIKIMPYSTF LNLS TSPYNADFDGDEMNMHV
Sbjct: 290 VERHLDDGDFVLFNRQPSLHKMYIMGHRIKIMPYSTFHLNLSATSPYNADFDGDEMNMHV 349
Query: 506 PQSFE 510
PQSF+
Sbjct: 350 PQSFD 354
>Os06g0612200 RNA polymerase Rpb1, domain 5 containing protein
Length = 237
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 1327 LDTEGVNLLAVMCHED-VDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVN 1385
L T GVN D +D SN + ++ G+EA R ++ E++ V G +V+
Sbjct: 87 LQTAGVNFEVFHKLVDYLDINEVRSNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVD 146
Query: 1386 YRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDPLRGV 1445
RHL ++ D MT+ G ++R G+ + T P + +FE +++AA + ESD L G
Sbjct: 147 MRHLNLIADFMTFDGGYRPMSRLGMGQFSTSPFGKMTFETATKFIVEAASHGESDTLDGP 206
Query: 1446 SENIMLGQLAPIGTGGCDLYLN 1467
S ++ LG+ +GTG L N
Sbjct: 207 SASVCLGKPVKVGTGSFGLLQN 228
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 54,410,781
Number of extensions: 2342085
Number of successful extensions: 5297
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 5288
Number of HSP's successfully gapped: 10
Length of query: 1834
Length of database: 17,035,801
Length adjustment: 115
Effective length of query: 1719
Effective length of database: 11,031,191
Effective search space: 18962617329
Effective search space used: 18962617329
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 163 (67.4 bits)