Os05g0151000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA polymerase II largest subunit (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0151000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to RNA polymerase II largest subunit (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.54 | 0.537 | 10.6 | 0.797 | 0.536 | -1.23 | 0.637 | -0.863 | -0.209 | 9 | 21.5 | 1392 | -- | -- |
| 131.45 | 0.534 | 10.5 | 0.947 | 0.543 | -1.09 | 0.656 | -- | -0.148 | 9.01 | 22.1 | 1443 | -- | -- |
| 131.82 | 0.535 | 10.6 | 0.819 | 0.532 | -1.25 | -- | -0.937 | -0.217 | 9.26 | 21.5 | 1399 | -- | -- |
| 132.84 | 0.537 | 10.5 | 0.967 | 0.541 | -1.08 | -- | -- | -0.148 | 9.28 | 22.1 | 1457 | -- | -- |
| 141.36 | 0.554 | 10.6 | 0.752 | -- | -1.11 | -- | -0.619 | -0.192 | -- | 21.9 | 859 | -- | -- |
| 173.44 | 0.617 | 10.6 | 0.544 | 0.552 | -- | 0.547 | -- | -0.5 | 9.35 | -- | -- | -- | -- |
| 174.44 | 0.619 | 10.6 | 0.566 | 0.547 | -- | -- | -- | -0.498 | 9.61 | -- | -- | -- | -- |
| 142.55 | 0.556 | 10.6 | 0.924 | -- | -1.07 | -- | -- | -0.152 | -- | 22.1 | 831 | -- | -- |
| 153.98 | 0.578 | 10.6 | -- | 0.482 | -0.799 | -- | -- | -0.311 | 9.08 | 22.4 | 1147 | -- | -- |
| 192.16 | 0.648 | 10.6 | 0.561 | -- | -- | -- | -- | -0.497 | -- | -- | -- | -- | -- |
| 182.88 | 0.633 | 10.6 | -- | 0.546 | -- | -- | -- | -0.561 | 9.54 | -- | -- | -- | -- |
| 162.6 | 0.594 | 10.6 | -- | -- | -0.862 | -- | -- | -0.294 | -- | 22.37 | 802 | -- | -- |
| 200.48 | 0.661 | 10.7 | -- | -- | -- | -- | -- | -0.559 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.52 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 131.61 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 5 | 131.95 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 10 | 132.12 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 21 | 132.24 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 34 | 132.40 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 47 | 132.48 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 75 | 132.66 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 76 | 132.67 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 89 | 132.75 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 104 | 132.81 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 125 | 132.95 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 137 | 133.06 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 180 | 133.32 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 185 | 133.36 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 311 | 134.31 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 344 | 134.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 395 | 134.80 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 526 | 135.37 | temperature | 25.0 | 1440 | < th | dose dependent | no | NA | NA |
| 529 | 135.37 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 531 | 135.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 545 | 135.43 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 568 | 135.53 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 617 | 135.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 630 | 135.78 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 639 | 135.81 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 644 | 135.83 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 677 | 135.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 696 | 136.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 851 | 136.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 859 | 136.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 860 | 136.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |