Os04g0492300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-directed RNA polymerase II largest chain.
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Os04g0492300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-directed RNA polymerase II largest chain.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.12 | 0.405 | 9.03 | 1.31 | 1.15 | 0.463 | 0.472 | 0.00294 | 0.273 | 18.8 | 20.42 | 106 | -- | -- |
| 73.98 | 0.401 | 9.03 | 1.3 | 1.13 | 0.473 | 0.473 | -- | 0.269 | 18.8 | 20.26 | 122 | -- | -- |
| 74.52 | 0.402 | 9.03 | 1.3 | 1.13 | 0.462 | -- | -0.00876 | 0.277 | 18.7 | 20.26 | 122 | -- | -- |
| 74.52 | 0.402 | 9.03 | 1.3 | 1.13 | 0.466 | -- | -- | 0.278 | 18.8 | 20.26 | 122 | -- | -- |
| 86.2 | 0.432 | 9.04 | 1.22 | -- | 1.31 | -- | 0.952 | 0.142 | -- | 0.3194 | 724 | -- | -- |
| 80.17 | 0.42 | 9.02 | 1.36 | 1.21 | -- | 0.377 | -- | 0.317 | 17.7 | -- | -- | -- | -- |
| 80.52 | 0.42 | 9.02 | 1.36 | 1.21 | -- | -- | -- | 0.319 | 17.7 | -- | -- | -- | -- |
| 85.05 | 0.43 | 9.04 | 1.23 | -- | 1.4 | -- | -- | 0.207 | -- | 0.1966 | 711 | -- | -- |
| 118.61 | 0.507 | 9.05 | -- | 1.11 | 0.653 | -- | -- | 0.167 | 19.1 | 20.09 | 119 | -- | -- |
| 156.97 | 0.585 | 9 | 1.32 | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
| 129.33 | 0.532 | 9.05 | -- | 1.19 | -- | -- | -- | 0.167 | 17.8 | -- | -- | -- | -- |
| 123.27 | 0.517 | 9.04 | -- | -- | 1.48 | -- | -- | 0.126 | -- | 0.009994 | 705 | -- | -- |
| 203.13 | 0.665 | 9.03 | -- | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.04 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 3 | 64.10 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 4 | 64.33 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 16 | 64.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 17 | 64.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 18 | 64.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 19 | 64.70 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 21 | 64.79 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 23 | 64.92 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 31 | 65.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 33 | 65.10 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 34 | 65.10 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 36 | 65.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 37 | 65.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 40 | 65.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 47 | 65.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 49 | 65.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 51 | 65.27 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 91 | 65.59 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 92 | 65.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 94 | 65.62 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 109 | 65.78 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 184 | 66.20 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 194 | 66.26 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 200 | 66.29 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 227 | 66.45 | radiation | 1.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 256 | 66.54 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 268 | 66.59 | radiation | 1.0 | 90 | > th | dose independent | sin | 11 | NA |
| 277 | 66.64 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 291 | 66.67 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 292 | 66.68 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 294 | 66.68 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 312 | 66.74 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 333 | 66.85 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 336 | 66.86 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 350 | 66.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 353 | 66.91 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 355 | 66.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 366 | 66.94 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 4 |
| 367 | 66.94 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 368 | 66.95 | radiation | 1.0 | 90 | < th | dose independent | sin | 10 | NA |
| 378 | 67.01 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 380 | 67.01 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 13 |
| 381 | 67.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 382 | 67.02 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 393 | 67.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 399 | 67.04 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 401 | 67.04 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 402 | 67.04 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 404 | 67.04 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 405 | 67.04 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 406 | 67.04 | radiation | 30.0 | 90 | < th | dose independent | rect. | 17 | 16 |
| 407 | 67.04 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 416 | 67.07 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 421 | 67.10 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 424 | 67.11 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 425 | 67.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 430 | 67.13 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 439 | 67.19 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 440 | 67.20 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 448 | 67.20 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 451 | 67.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 469 | 67.26 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 488 | 67.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 493 | 67.35 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 499 | 67.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 500 | 67.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 522 | 67.40 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 547 | 67.43 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 552 | 67.45 | wind | 1.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 560 | 67.47 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 580 | 67.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 581 | 67.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 582 | 67.51 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 583 | 67.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 585 | 67.51 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 586 | 67.51 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 591 | 67.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 592 | 67.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 593 | 67.51 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 596 | 67.51 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 618 | 67.54 | humidity | 90.0 | 90 | < th | dose independent | rect. | 9 | 8 |
| 625 | 67.54 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 633 | 67.55 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 641 | 67.55 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 643 | 67.55 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 650 | 67.55 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 655 | 67.56 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 756 | 67.73 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 768 | 67.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 774 | 67.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 777 | 67.75 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 20 |
| 780 | 67.75 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 784 | 67.76 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 789 | 67.77 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 854 | 67.89 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 867 | 67.93 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 869 | 67.93 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 6 |
| 879 | 67.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 882 | 67.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 887 | 67.98 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 907 | 68.03 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 908 | 68.03 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 910 | 68.03 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 975 | 68.14 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 979 | 68.14 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 984 | 68.15 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 16 |