Os06g0612200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase Rpb1, domain 5 containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0612200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA polymerase Rpb1, domain 5 containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.4 | 0.489 | 9.7 | 1.79 | 1.67 | 1.12 | 1.03 | 0.722 | 0.46 | 18.1 | 7.046 | 93 | -- | -- |
| 109.37 | 0.487 | 9.7 | 1.81 | 1.67 | 1.06 | 1.01 | -- | 0.469 | 18 | 7.122 | 92 | -- | -- |
| 110.98 | 0.491 | 9.7 | 1.79 | 1.67 | 1.11 | -- | 0.708 | 0.462 | 18.1 | 7.288 | 92 | -- | -- |
| 111.98 | 0.493 | 9.7 | 1.8 | 1.68 | 1.04 | -- | -- | 0.468 | 18 | 6.68 | 92 | -- | -- |
| 171.64 | 0.61 | 9.69 | 1.69 | -- | 2.03 | -- | 0.773 | 0.369 | -- | -31.42 | 517 | -- | -- |
| 125.25 | 0.525 | 9.68 | 1.8 | 1.85 | -- | 0.938 | -- | 0.514 | 17 | -- | -- | -- | -- |
| 127.5 | 0.529 | 9.68 | 1.8 | 1.86 | -- | -- | -- | 0.518 | 17 | -- | -- | -- | -- |
| 170.99 | 0.609 | 9.69 | 1.66 | -- | 2 | -- | -- | 0.313 | -- | -13.31 | 538 | -- | -- |
| 195.85 | 0.652 | 9.74 | -- | 1.54 | 1.06 | -- | -- | 0.278 | 18.1 | 6.39 | 167 | -- | -- |
| 308.99 | 0.821 | 9.66 | 1.74 | -- | -- | -- | -- | 0.471 | -- | -- | -- | -- | -- |
| 213.25 | 0.683 | 9.72 | -- | 1.82 | -- | -- | -- | 0.317 | 17 | -- | -- | -- | -- |
| 243.61 | 0.727 | 9.74 | -- | -- | 2.03 | -- | -- | 0.12 | -- | -9.956 | 561 | -- | -- |
| 388.47 | 0.92 | 9.7 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.82 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 2 | 96.07 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 3 | 96.40 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 6 | 97.06 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 7 | 97.16 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 9 | 97.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 10 | 97.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 13 | 97.50 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 34 | 98.15 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 36 | 98.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 38 | 98.20 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 39 | 98.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 41 | 98.20 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 42 | 98.20 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 43 | 98.20 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 44 | 98.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 49 | 98.38 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 51 | 98.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 52 | 98.42 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 57 | 98.55 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 80 | 99.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 82 | 99.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 83 | 99.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 6 |
| 85 | 99.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 92 | 99.22 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 96 | 99.24 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 109 | 99.35 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 148 | 99.70 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 150 | 99.74 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 154 | 99.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 156 | 99.79 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 157 | 99.79 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 159 | 99.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 160 | 99.79 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 161 | 99.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 171 | 99.93 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 175 | 99.96 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 191 | 100.05 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 210 | 100.27 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 224 | 100.37 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 234 | 100.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 18 |
| 236 | 100.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 241 | 100.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 263 | 100.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 266 | 100.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 269 | 100.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 270 | 100.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 289 | 100.66 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 296 | 100.75 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 21 |
| 304 | 100.80 | temperature | 15.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 313 | 100.88 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 334 | 100.90 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 339 | 100.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 340 | 100.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 344 | 100.95 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 345 | 100.95 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 363 | 101.02 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 370 | 101.09 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 376 | 101.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 377 | 101.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 381 | 101.14 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 385 | 101.15 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 387 | 101.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 388 | 101.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 389 | 101.15 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 390 | 101.15 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 391 | 101.15 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 396 | 101.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 397 | 101.15 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 409 | 101.17 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 421 | 101.23 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 422 | 101.23 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 450 | 101.39 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 468 | 101.49 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 482 | 101.55 | radiation | 10.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 486 | 101.58 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 493 | 101.60 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 518 | 101.66 | radiation | 30.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 542 | 101.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 546 | 101.78 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 14 |
| 548 | 101.78 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 550 | 101.81 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 552 | 101.81 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 571 | 101.86 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 582 | 101.87 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 595 | 101.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 598 | 101.93 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 599 | 101.93 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 600 | 101.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 603 | 101.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 605 | 101.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 635 | 102.04 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 670 | 102.16 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 683 | 102.16 | radiation | 20.0 | 10 | < th | dose independent | rect. | 5 | 17 |
| 686 | 102.17 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 691 | 102.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 693 | 102.19 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 727 | 102.31 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 738 | 102.34 | temperature | 15.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 742 | 102.36 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 743 | 102.36 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 749 | 102.37 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 794 | 102.59 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 799 | 102.61 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 816 | 102.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 889 | 102.73 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 898 | 102.77 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 946 | 102.91 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 17 |
| 947 | 102.91 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 961 | 102.95 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 963 | 102.95 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 964 | 102.95 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 7 |
| 968 | 102.95 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 977 | 102.98 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 990 | 103.04 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |