BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0150800 Os05g0150800|AK103505
(292 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0150800 Similar to Plastid 5,10-methylene-tetrahydrofo... 582 e-166
Os02g0120900 Tetrahydrofolate dehydrogenase/cyclohydrolase ... 400 e-112
Os09g0327300 Similar to Plastid 5,10-methylene-tetrahydrofo... 352 2e-97
AK119828 286 1e-77
AK121260 244 5e-65
>Os05g0150800 Similar to Plastid 5,10-methylene-tetrahydrofolate dehydrogenase
(Fragment)
Length = 292
Score = 582 bits (1499), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MAQIIDGKAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEV 60
MAQIIDGKAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEV
Sbjct: 1 MAQIIDGKAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEV 60
Query: 61 GIRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHINEEKILNEISLEKDVD 120
GIRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHINEEKILNEISLEKDVD
Sbjct: 61 GIRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHINEEKILNEISLEKDVD 120
Query: 121 GFHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSLLL 180
GFHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSLLL
Sbjct: 121 GFHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSLLL 180
Query: 181 LKADATVSIVHSRTPNPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNSISDPT 240
LKADATVSIVHSRTPNPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNSISDPT
Sbjct: 181 LKADATVSIVHSRTPNPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNSISDPT 240
Query: 241 RKSGYRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLLKNTVDGAKRGIVQ 292
RKSGYRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLLKNTVDGAKRGIVQ
Sbjct: 241 RKSGYRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLLKNTVDGAKRGIVQ 292
>Os02g0120900 Tetrahydrofolate dehydrogenase/cyclohydrolase family protein
Length = 371
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/287 (66%), Positives = 232/287 (80%)
Query: 2 AQIIDGKAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEVG 61
A+IIDGK VA IR E+A ++A + A +VPGLAV++VGSRKDSQTYV+ K+KAC VG
Sbjct: 80 AKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVG 139
Query: 62 IRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHINEEKILNEISLEKDVDG 121
I+S +V+L ED SE ++ + N+DP+VHGILVQLPLP H+N+E ILN +S+EKDVDG
Sbjct: 140 IKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVDG 199
Query: 122 FHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSLLLL 181
FHPLNIG+LAM+GRDP F+PCTPKGCMELL R GV I GKRAVV+GRSNIVG+P +LLL
Sbjct: 200 FHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQ 259
Query: 182 KADATVSIVHSRTPNPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNSISDPTR 241
KA+ATVSIVHS T PE I R+ADIVIAA G A +++G WIKPGAA+IDVG N + DP
Sbjct: 260 KANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDDPES 319
Query: 242 KSGYRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLLKNTVDGAKR 288
GYRLVGDV + E SK+AG +TPVPGGVGPMT+AMLL NT++ AKR
Sbjct: 320 PRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKR 366
>Os09g0327300 Similar to Plastid 5,10-methylene-tetrahydrofolate dehydrogenase
(Fragment)
Length = 395
Score = 352 bits (903), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 170/286 (59%), Positives = 218/286 (76%)
Query: 2 AQIIDGKAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEVG 61
A IIDGK+VA DIR ++A +V + +A VPGLAVV+VG R+DS++YV+ K K C EVG
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNAVGHVPGLAVVLVGDRRDSESYVRYKIKGCEEVG 157
Query: 62 IRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHINEEKILNEISLEKDVDG 121
I+S+ +L + +E +V V R N DP+VHGILVQLPLP+H++EE+IL+ ISLEKDVDG
Sbjct: 158 IKSLLAELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQHMDEERILSAISLEKDVDG 217
Query: 122 FHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSLLLL 181
FHPLN+G LA++ R PLF+PC K C+ELL +SG+ + GK V+GRS +VGLP SLLL
Sbjct: 218 FHPLNVGNLALRSRKPLFVPCAAKACLELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQ 277
Query: 182 KADATVSIVHSRTPNPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNSISDPTR 241
+ ATVSI+H+ T NPE I R++DIVI+AAG A +++G W+K GA VIDVGTN I DPT
Sbjct: 278 RHHATVSIIHAFTTNPEEITRQSDIVISAAGVANLVRGSWLKKGAVVIDVGTNPIEDPTS 337
Query: 242 KSGYRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLLKNTVDGAK 287
GYRL GDV F E K+A +TPVPGGVGP+T+AMLL NT+D AK
Sbjct: 338 DYGYRLTGDVCFEEAVKLASAITPVPGGVGPVTIAMLLANTLDSAK 383
>AK119828
Length = 699
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/294 (51%), Positives = 201/294 (68%), Gaps = 5/294 (1%)
Query: 2 AQIIDGKAVAADIRREVAADVAALSSAHN-LVPGLAVVIVGSRKDSQTYVQMKRKACAEV 60
A++IDG A+A ++R VA +A L H+ P L ++ VGS+ S TY++MK+ A E
Sbjct: 84 AKLIDGTALAKEVRARVAQRIAELKQQHSSFQPHLCIMQVGSQSASSTYIRMKKLAAEEC 143
Query: 61 GIRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHIN---EEKILNEISLEK 117
G+R V L + SE ++ V LN D +V GILVQLPL HI+ E ++ IS EK
Sbjct: 144 GMRYTHVQLPDGASEQDIIQRVRELNEDISVDGILVQLPLGDHISSDAERRVTEAISPEK 203
Query: 118 DVDGFHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVT-INGKRAVVVGRSNIVGLPV 176
DVDGFH LNIG L+ K +PLFLPCTP GC++LL +G+T + G RAVV+GRS+IVG PV
Sbjct: 204 DVDGFHALNIGHLSSKACNPLFLPCTPAGCIKLLENAGITNMAGLRAVVIGRSDIVGNPV 263
Query: 177 SLLLLKADATVSIVHSRTPNPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNSI 236
+ LL D TV+ HSRT + + + +ADIVIAA G+ I+ +W+K GA VIDVGTN +
Sbjct: 264 ASLLRARDCTVTQCHSRTADLPAHLAQADIVIAAMGKPHFIQAEWLKKGAVVIDVGTNFV 323
Query: 237 SDPTRKSGYRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLLKNTVDGAKRGI 290
D ++KSGYRLVGDVDF +KVA +TP PGGVGPMTVAML++N + A+R +
Sbjct: 324 DDASKKSGYRLVGDVDFEPATKVASAITPAPGGVGPMTVAMLMENVLISAERSL 377
>AK121260
Length = 968
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 132/300 (44%), Positives = 184/300 (61%), Gaps = 13/300 (4%)
Query: 2 AQIIDGKAVAADIRREVAADVAALSSAH-NLVPGLAVVIVGSRKDSQTYVQMKRKACAEV 60
Q+IDGK +A +IR + V + + + PG AVV VG+R+DS Y++ K KA E+
Sbjct: 26 TQLIDGKEIAKNIRDKCRLMVEEIRNQQKDFKPGFAVVQVGNREDSNVYIRHKLKAAEEI 85
Query: 61 GIRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLP--KHINEEKILNEISLEKD 118
GI + V L +E L+ ++ +LN DPA+HGI+VQLP + I+ +I N +S +KD
Sbjct: 86 GIDARLVRLDSSTTEPQLIQQIEQLNNDPAIHGIIVQLPFDSVQTIDANRIANTVSPDKD 145
Query: 119 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSL 178
+DG LN G L+ D F+PCTP GC+EL+ +G I G RAVVVGRS IVG P+
Sbjct: 146 IDGLSDLNAGLLSHGNLDKCFVPCTPNGCIELIRATGTQIEGARAVVVGRSKIVGTPMFE 205
Query: 179 LLLKADATVSIVHSRTPNPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNSISD 238
LL +ATV+I HS+T N + I+++ADIV+A G+ I G WIK A VID G + +
Sbjct: 206 LLKHYNATVTICHSKTRNIQDIIKDADIVVACLGKPKFIPGSWIKENAVVIDCGITPVQE 265
Query: 239 ------PTRKSG----YRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLLKNTVDGAKR 288
++ G +L GDVD VA +TPVPGGVGPMTVA+L++NT+ A+R
Sbjct: 266 LDLSKLSEKEKGENGKTKLYGDVDLDSCQGVASWITPVPGGVGPMTVALLMRNTITAAQR 325
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,569,578
Number of extensions: 395019
Number of successful extensions: 1143
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 5
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)