Os09g0327300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plastid 5,10-methylene-tetrahydrofolate dehydrogenase (Fragment).
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Os09g0327300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Plastid 5,10-methylene-tetrahydrofolate dehydrogenase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.41 | 0.578 | 11.9 | -0.651 | 1.35 | 3.51 | -0.559 | -2.28 | -0.735 | 10.7 | 0.7229 | 721 | -- | -- |
| 158.69 | 0.587 | 11.9 | -0.606 | 1.33 | 3.44 | -0.371 | -- | -0.717 | 10.7 | 0.47 | 718 | -- | -- |
| 152.64 | 0.575 | 11.9 | -0.676 | 1.36 | 3.54 | -- | -2.16 | -0.74 | 10.6 | 0.73 | 719 | -- | -- |
| 158.93 | 0.587 | 11.9 | -0.63 | 1.35 | 3.6 | -- | -- | -0.722 | 10.2 | 0.43 | 712 | -- | -- |
| 159.51 | 0.588 | 11.9 | -0.498 | -- | 2.73 | -- | -2.02 | -0.696 | -- | 1.55 | 486 | -- | -- |
| 179.04 | 0.627 | 11.9 | -0.308 | 2.75 | -- | -1.49 | -- | -0.561 | 15.8 | -- | -- | -- | -- |
| 185.67 | 0.638 | 11.9 | -0.33 | 2.74 | -- | -- | -- | -0.569 | 15.8 | -- | -- | -- | -- |
| 170.25 | 0.608 | 12 | -0.445 | -- | 2.72 | -- | -- | -0.696 | -- | 1.47 | 490 | -- | -- |
| 169.07 | 0.606 | 11.9 | -- | 1.3 | 3.55 | -- | -- | -0.669 | 10.2 | 0.73 | 702 | -- | -- |
| 599.65 | 1.14 | 11.9 | -0.444 | -- | -- | -- | -- | -0.642 | -- | -- | -- | -- | -- |
| 188.54 | 0.642 | 11.9 | -- | 2.75 | -- | -- | -- | -0.533 | 15.8 | -- | -- | -- | -- |
| 175.76 | 0.617 | 11.9 | -- | -- | 2.72 | -- | -- | -0.644 | -- | 1.54 | 490 | -- | -- |
| 604.84 | 1.15 | 11.9 | -- | -- | -- | -- | -- | -0.593 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.85 | radiation | 1 | 270 | < th | dose dependent | sin | 0 | NA |
| 2 | 147.32 | radiation | 1 | 270 | < th | dose independent | sin | 0 | NA |
| 3 | 147.35 | radiation | 1 | 270 | > th | dose independent | sin | 0 | NA |
| 4 | 147.46 | radiation | 1 | 270 | > th | dose independent | rect. | 18 | 23 |
| 5 | 148.19 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 6 | 148.22 | radiation | 1 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 8 | 148.62 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 9 | 148.71 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 20 |
| 10 | 148.73 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 13 |
| 25 | 149.01 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 13 |
| 27 | 149.03 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 20 |
| 45 | 149.57 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 22 |
| 46 | 149.60 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 12 |
| 63 | 149.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 74 | 150.36 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 101 | 150.83 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 23 |
| 102 | 150.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 147 | 151.54 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 8 |
| 150 | 151.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 151 | 151.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 156 | 151.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 21 |
| 173 | 151.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 186 | 151.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 191 | 151.95 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 218 | 152.19 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 227 | 152.30 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 18 |
| 237 | 152.36 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 18 |
| 241 | 152.36 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 21 |
| 244 | 152.36 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 23 |
| 245 | 152.37 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 295 | 152.39 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 298 | 152.42 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 23 |
| 310 | 152.53 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 345 | 152.84 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 367 | 152.95 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 406 | 153.24 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 409 | 153.25 | humidity | 70 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 451 | 153.72 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 531 | 154.31 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 583 | 154.63 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 14 |
| 594 | 154.71 | humidity | 50 | 270 | > th | dose dependent | rect. | 17 | 3 |
| 638 | 155.05 | humidity | 70 | 270 | > th | dose independent | rect. | 17 | 3 |
| 648 | 155.13 | humidity | 50 | 270 | > th | dose dependent | rect. | 15 | 6 |
| 692 | 155.35 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 698 | 155.39 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 700 | 155.40 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 14 |
| 732 | 155.53 | humidity | 50 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 736 | 155.54 | humidity | 60 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 784 | 155.73 | humidity | 90 | 270 | < th | dose independent | rect. | 20 | 21 |
| 787 | 155.74 | humidity | 70 | 270 | > th | dose independent | rect. | 1 | 20 |
| 792 | 155.76 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 830 | 155.96 | radiation | 1 | 720 | < th | dose dependent | sin | 17 | NA |
| 901 | 156.02 | radiation | 1 | 90 | < th | dose independent | rect. | 10 | 13 |
| 919 | 156.10 | radiation | 1 | 90 | < th | dose independent | rect. | 12 | 11 |
| 922 | 156.11 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 3 |
| 924 | 156.11 | humidity | 80 | 10 | > th | dose independent | rect. | 4 | 19 |
| 928 | 156.13 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 939 | 156.19 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 11 |
| 945 | 156.21 | humidity | 70 | 30 | > th | dose independent | rect. | 10 | 13 |
| 959 | 156.29 | radiation | 1 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 968 | 156.33 | humidity | 70 | 270 | > th | dose independent | rect. | 2 | 18 |
| 975 | 156.36 | humidity | 60 | 10 | > th | dose dependent | rect. | 10 | 13 |
| 981 | 156.37 | radiation | 1 | 90 | < th | dose dependent | rect. | 12 | 11 |