BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0327300 Os09g0327300|AK059603
(395 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38660.1 | chr2:16166392-16168194 FORWARD LENGTH=353 415 e-116
AT4G00620.1 | chr4:259265-260788 REVERSE LENGTH=361 396 e-110
AT3G12290.1 | chr3:3919591-3921326 FORWARD LENGTH=300 355 2e-98
AT4G00600.1 | chr4:255320-256610 REVERSE LENGTH=311 312 3e-85
>AT2G38660.1 | chr2:16166392-16168194 FORWARD LENGTH=353
Length = 352
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 193/294 (65%), Positives = 243/294 (82%)
Query: 93 DYDSTATIIDGKSVAEDIRFQIAEEVRQMKNAVGHVPGLAVVLVGDRRDSESYVRYKIKG 152
+ + +IDG +AE+IR +I EV +MK AVG VPGLAVVLVG++RDS++YVR KIK
Sbjct: 58 ETEQKTVVIDGNVIAEEIRTKIISEVGKMKKAVGKVPGLAVVLVGEQRDSQTYVRNKIKA 117
Query: 153 CEEVGIKSLLAELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQHMDEERILSAISLE 212
CEE GIKS+LAELP +CTE ++ + +FNED S+HGILVQLPLPQH++E +IL+ + LE
Sbjct: 118 CEETGIKSVLAELPEDCTEGQIISVLRKFNEDTSIHGILVQLPLPQHLNESKILNMVRLE 177
Query: 213 KDVDGFHPLNVGNLALRSRKPLFVPCAAKACLELLLQSGIELMGKHVTVIGRSKVVGLPT 272
KDVDGFHPLNVGNLA+R R+PLFV C K C+ELL+++G+E+ GK+ VIGRS +VGLP
Sbjct: 178 KDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRTGVEIAGKNAVVIGRSNIVGLPM 237
Query: 273 SLLLQRHHATVSIIHAFTTNPEEITRQSDIVISAAGVANLVRGSWLKKGAVVIDVGTNPI 332
SLLLQRH ATVS +HAFT +PE ITR++DIVI+AAG+ NLVRGSWLK GAVVIDVGT P+
Sbjct: 238 SLLLQRHDATVSTVHAFTKDPEHITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPV 297
Query: 333 EDPTSDYGYRLTGDVCFEEAVKLASAITPVPGGVGPVTIAMLLANTLDSAKLAY 386
ED + ++GYRL GDVC+EEA+ +ASAITPVPGGVGP+TI MLL NTL++AK +
Sbjct: 298 EDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLEAAKRIF 351
>AT4G00620.1 | chr4:259265-260788 REVERSE LENGTH=361
Length = 360
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/291 (64%), Positives = 234/291 (80%)
Query: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNAVGHVPGLAVVLVGDRRDSESYVRYKIKGCEEVG 157
A +IDGK+VA+ IR +I EV +MK ++G +PGLAV+LVGDR+DS +YVR K K C+ VG
Sbjct: 69 AIVIDGKAVAKKIRDEITIEVSRMKESIGVIPGLAVILVGDRKDSATYVRNKKKACDSVG 128
Query: 158 IKSLLAELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQHMDEERILSAISLEKDVDG 217
IKS L + +E+ V+ SVS FN+DPSVHGILVQLPLP HMDE+ IL+A+S+EKDVDG
Sbjct: 129 IKSFEVRLAEDSSEEEVLKSVSGFNDDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDG 188
Query: 218 FHPLNVGNLALRSRKPLFVPCAAKACLELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQ 277
FHPLN+G LA+R R+PLFVPC K C+ELL + IE+ GK VIGRS +VG+P +LLLQ
Sbjct: 189 FHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNIEIKGKRAVVIGRSNIVGMPAALLLQ 248
Query: 278 RHHATVSIIHAFTTNPEEITRQSDIVISAAGVANLVRGSWLKKGAVVIDVGTNPIEDPTS 337
R ATVSIIH+ T NPEEITR++DI+ISA G N+VRGSW+K GAV+IDVG NP+EDP++
Sbjct: 249 REDATVSIIHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVLIDVGINPVEDPSA 308
Query: 338 DYGYRLTGDVCFEEAVKLASAITPVPGGVGPVTIAMLLANTLDSAKLAYGL 388
GYRL GD+C+EEA K+ASAITPVPGGVGP+TIAMLL+NTL SAK +
Sbjct: 309 ARGYRLVGDICYEEASKVASAITPVPGGVGPMTIAMLLSNTLTSAKRIHNF 359
>AT3G12290.1 | chr3:3919591-3921326 FORWARD LENGTH=300
Length = 299
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 169/293 (57%), Positives = 219/293 (74%)
Query: 95 DSTATIIDGKSVAEDIRFQIAEEVRQMKNAVGHVPGLAVVLVGDRRDSESYVRYKIKGCE 154
D TA IIDGK++A IR +IAEEVR + G VPGLAVV+VG R+DS++YV K K C
Sbjct: 6 DHTAKIIDGKAIAHTIRSEIAEEVRGLSEKHGKVPGLAVVIVGSRKDSQTYVNTKRKACA 65
Query: 155 EVGIKSLLAELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQHMDEERILSAISLEKD 214
EVGIKS LP +E ++ V N +P VHGILVQLPLP+H++EE IL AIS++KD
Sbjct: 66 EVGIKSFDVGLPEEVSEADLISKVHELNSNPDVHGILVQLPLPKHINEEHILGAISIDKD 125
Query: 215 VDGFHPLNVGNLALRSRKPLFVPCAAKACLELLLQSGIELMGKHVTVIGRSKVVGLPTSL 274
VDGFHPLN+G LA++ R+PLF+PC K CLELL +SG+++ G+ V+GRS +VGLP SL
Sbjct: 126 VDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLARSGVKIKGQRAVVVGRSNIVGLPVSL 185
Query: 275 LLQRHHATVSIIHAFTTNPEEITRQSDIVISAAGVANLVRGSWLKKGAVVIDVGTNPIED 334
LL + ATV+ +H+ T +PE I R++DIVI+A G A++++G+W+K GA VIDVGTN + D
Sbjct: 186 LLLKADATVTTVHSHTKDPEAIIREADIVIAACGQAHMIKGNWIKPGAAVIDVGTNAVSD 245
Query: 335 PTSDYGYRLTGDVCFEEAVKLASAITPVPGGVGPVTIAMLLANTLDSAKLAYG 387
P+ GYRL GDV F EA K+A ITPVPGGVGP+T+AMLL NT+D AK +G
Sbjct: 246 PSKKSGYRLVGDVDFAEASKVAGFITPVPGGVGPMTVAMLLRNTVDGAKRVFG 298
>AT4G00600.1 | chr4:255320-256610 REVERSE LENGTH=311
Length = 310
Score = 312 bits (799), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 160/291 (54%), Positives = 201/291 (69%), Gaps = 36/291 (12%)
Query: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNAVGHVPGLAVVLVGDRRDSESYVRYKIKGCEEVG 157
A +IDGK+ A+ IR I EV +MK ++G VP
Sbjct: 55 AIVIDGKAEAKKIRDDIKIEVSRMKESIGVVP---------------------------- 86
Query: 158 IKSLLAELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQHMDEERILSAISLEKDVDG 217
AE + +E+ V+ VS FN+DPSVHG+LVQLPLP HMDE+ IL+A+S+EKDVDG
Sbjct: 87 -----AE---DSSEEEVLKYVSGFNDDPSVHGVLVQLPLPSHMDEQNILNAVSIEKDVDG 138
Query: 218 FHPLNVGNLALRSRKPLFVPCAAKACLELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQ 277
FHPLN+G LA+R R+PLFVPC K C+ELL + IE GK VIGRS +VG+P +LLLQ
Sbjct: 139 FHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNIEFKGKRAVVIGRSNIVGMPAALLLQ 198
Query: 278 RHHATVSIIHAFTTNPEEITRQSDIVISAAGVANLVRGSWLKKGAVVIDVGTNPIEDPTS 337
+ ATVSIIH+ T NPEE+TRQ+DI+ISA G N+VRGSW+K GAV+IDVG P+EDP++
Sbjct: 199 KEDATVSIIHSRTMNPEELTRQADILISAVGKPNMVRGSWIKPGAVLIDVGIKPVEDPSA 258
Query: 338 DYGYRLTGDVCFEEAVKLASAITPVPGGVGPVTIAMLLANTLDSAKLAYGL 388
G RL GD+C+ EA K+ASAITPVPG VGP+TIAMLL+NTL SAK +
Sbjct: 259 AGGERLVGDICYVEASKIASAITPVPGDVGPMTIAMLLSNTLTSAKRIHNF 309
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,649,893
Number of extensions: 269115
Number of successful extensions: 602
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 4
Length of query: 395
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 294
Effective length of database: 8,337,553
Effective search space: 2451240582
Effective search space used: 2451240582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)