Os02g0120900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetrahydrofolate dehydrogenase/cyclohydrolase family protein.
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Os02g0120900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetrahydrofolate dehydrogenase/cyclohydrolase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.61 | 0.331 | 10.8 | 0.701 | 1.38 | -0.514 | 0.77 | 0.0713 | -0.187 | 17.2 | 20 | 30 | -- | -- |
| 50.63 | 0.331 | 10.8 | 0.691 | 1.38 | -0.522 | 0.798 | -- | -0.187 | 17.2 | 20.03 | 30 | -- | -- |
| 51.62 | 0.335 | 10.8 | 0.733 | 1.39 | -0.468 | -- | 0.285 | -0.171 | 17.1 | 20.9 | 102 | -- | -- |
| 52.06 | 0.336 | 10.8 | 0.689 | 1.4 | -0.477 | -- | -- | -0.175 | 17.2 | 21 | 101 | -- | -- |
| 148.52 | 0.568 | 10.8 | 0.762 | -- | -0.362 | -- | 0.347 | -0.179 | -- | 21.6 | 1329 | -- | -- |
| 61.13 | 0.367 | 10.8 | 0.554 | 1.32 | -- | 0.644 | -- | -0.282 | 17.5 | -- | -- | -- | -- |
| 62.16 | 0.369 | 10.8 | 0.552 | 1.32 | -- | -- | -- | -0.28 | 17.5 | -- | -- | -- | -- |
| 148.73 | 0.568 | 10.8 | 0.661 | -- | -0.377 | -- | -- | -0.199 | -- | 21.6 | 1356 | -- | -- |
| 63.84 | 0.372 | 10.8 | -- | 1.38 | -0.369 | -- | -- | -0.266 | 17.2 | 20.9 | 115 | -- | -- |
| 153.21 | 0.578 | 10.8 | 0.508 | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
| 70.21 | 0.392 | 10.8 | -- | 1.31 | -- | -- | -- | -0.341 | 17.5 | -- | -- | -- | -- |
| 153.89 | 0.58 | 10.9 | -- | -- | 0.27 | -- | -- | -0.493 | -- | 24.13 | 2719 | -- | -- |
| 160.03 | 0.59 | 10.8 | -- | -- | -- | -- | -- | -0.368 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.90 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 18 |
| 36 | 46.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 41 | 46.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 46 | 46.88 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 71 | 47.66 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 16 |
| 85 | 47.93 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 16 |
| 105 | 48.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 106 | 48.30 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 6 |
| 108 | 48.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 112 | 48.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 127 | 48.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 129 | 48.61 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 4 |
| 140 | 48.69 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 143 | 48.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 144 | 48.73 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 8 |
| 157 | 48.84 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 17 |
| 167 | 48.94 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 168 | 48.95 | wind | 7 | 270 | < th | dose independent | rect. | 9 | 17 |
| 175 | 48.98 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 181 | 49.02 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 188 | 49.06 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 22 |
| 189 | 49.06 | humidity | 60 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 193 | 49.10 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 8 |
| 199 | 49.14 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 200 | 49.15 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 21 |
| 217 | 49.22 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 234 | 49.30 | humidity | 80 | 270 | < th | dose independent | rect. | 23 | 15 |
| 245 | 49.35 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 17 |
| 250 | 49.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 265 | 49.37 | radiation | 1 | 270 | > th | dose dependent | sin | 4 | NA |
| 270 | 49.39 | radiation | 10 | 270 | > th | dose independent | rect. | 7 | 8 |
| 278 | 49.41 | temperature | 20 | 30 | > th | dose independent | sin | 8 | NA |
| 279 | 49.41 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 12 |
| 282 | 49.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 12 |
| 292 | 49.44 | radiation | 40 | 270 | < th | dose dependent | sin | 3 | NA |
| 305 | 49.47 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 19 |
| 306 | 49.47 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 313 | 49.49 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 322 | 49.51 | radiation | 20 | 270 | < th | dose dependent | sin | 2 | NA |
| 347 | 49.58 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 6 |
| 351 | 49.58 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 20 |
| 364 | 49.60 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 12 |
| 388 | 49.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 398 | 49.68 | radiation | 40 | 90 | < th | dose dependent | rect. | 6 | 16 |
| 419 | 49.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 430 | 49.75 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 20 |
| 433 | 49.76 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 438 | 49.78 | humidity | 60 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 445 | 49.80 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 16 |
| 479 | 49.87 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 20 |
| 480 | 49.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 11 |
| 513 | 49.92 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 22 |
| 517 | 49.93 | temperature | 20 | 30 | < th | dose independent | sin | 9 | NA |
| 535 | 49.95 | temperature | 25 | 10 | < th | dose dependent | sin | 8 | NA |
| 539 | 49.95 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 14 |
| 555 | 49.98 | radiation | 20 | 90 | < th | dose independent | rect. | 6 | 16 |
| 590 | 50.03 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 10 |
| 621 | 50.08 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 7 |
| 647 | 50.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 651 | 50.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 692 | 50.16 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 18 |
| 697 | 50.17 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 698 | 50.17 | humidity | 90 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 731 | 50.21 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 9 |
| 735 | 50.21 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 757 | 50.24 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 8 |
| 783 | 50.27 | humidity | 60 | 270 | > th | dose dependent | rect. | 2 | 12 |
| 788 | 50.28 | humidity | 90 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 873 | 50.34 | temperature | 20 | 30 | < th | dose independent | rect. | 12 | 23 |
| 879 | 50.35 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 10 |
| 892 | 50.36 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 17 |
| 932 | 50.40 | temperature | 20 | 30 | < th | dose independent | rect. | 16 | 19 |