BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0120900 Os02g0120900|Os02g0120900
(371 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0120900 Tetrahydrofolate dehydrogenase/cyclohydrolase ... 598 e-171
Os05g0150800 Similar to Plastid 5,10-methylene-tetrahydrofo... 401 e-112
Os09g0327300 Similar to Plastid 5,10-methylene-tetrahydrofo... 391 e-109
AK119828 271 5e-73
AK121260 248 5e-66
>Os02g0120900 Tetrahydrofolate dehydrogenase/cyclohydrolase family protein
Length = 371
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 79 CAKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138
CAKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAV
Sbjct: 79 CAKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138
Query: 139 GIKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVD 198
GIKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVD
Sbjct: 139 GIKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVD 198
Query: 199 GFHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLL 258
GFHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLL
Sbjct: 199 GFHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLL 258
Query: 259 QKANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDDPE 318
QKANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDDPE
Sbjct: 259 QKANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDDPE 318
Query: 319 SPRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKRIHKFK 371
SPRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKRIHKFK
Sbjct: 319 SPRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKRIHKFK 371
>Os05g0150800 Similar to Plastid 5,10-methylene-tetrahydrofolate dehydrogenase
(Fragment)
Length = 292
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/287 (66%), Positives = 232/287 (80%)
Query: 80 AKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVG 139
A+IIDGK VA IR E+A ++A + A +VPGLAV++VGSRKDSQTYV+ K+KAC VG
Sbjct: 2 AQIIDGKAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEVG 61
Query: 140 IKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVDG 199
I+S +V+L ED SE ++ + N+DP+VHGILVQLPLP H+N+E ILN +S+EKDVDG
Sbjct: 62 IRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHINEEKILNEISLEKDVDG 121
Query: 200 FHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQ 259
FHPLNIG+LAM+GRDP F+PCTPKGCMELL R GV I GKRAVV+GRSNIVG+P +LLL
Sbjct: 122 FHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSLLLL 181
Query: 260 KANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDDPES 319
KA+ATVSIVHS T PE I R+ADIVIAA G A +++G WIKPGAA+IDVG N + DP
Sbjct: 182 KADATVSIVHSRTPNPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNSISDPTR 241
Query: 320 PRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKR 366
GYRLVGDV + E SK+AG +TPVPGGVGPMT+AMLL NT++ AKR
Sbjct: 242 KSGYRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLLKNTVDGAKR 288
>Os09g0327300 Similar to Plastid 5,10-methylene-tetrahydrofolate dehydrogenase
(Fragment)
Length = 395
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/286 (65%), Positives = 231/286 (80%)
Query: 80 AKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVG 139
A IIDGK VA+ IR +IA E+ +MK+A+G VPGLAV+LVG R+DS++YVR K K CE VG
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNAVGHVPGLAVVLVGDRRDSESYVRYKIKGCEEVG 157
Query: 140 IKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVDG 199
IKS LP + +ED V+ ++ FN DPSVHGILVQLPLP HM++E IL+A+S+EKDVDG
Sbjct: 158 IKSLLAELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQHMDEERILSAISLEKDVDG 217
Query: 200 FHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQ 259
FHPLN+G LA++ R P FVPC K C+ELL + G+E+ GK VIGRS +VG+P +LLLQ
Sbjct: 218 FHPLNVGNLALRSRKPLFVPCAAKACLELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQ 277
Query: 260 KANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDDPES 319
+ +ATVSI+H+ T PEEITRQ+DIVI+A GVANLVRGSW+K GA +IDVG NP++DP S
Sbjct: 278 RHHATVSIIHAFTTNPEEITRQSDIVISAAGVANLVRGSWLKKGAVVIDVGTNPIEDPTS 337
Query: 320 PRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAK 365
GYRL GDVC+EEA K+A ITPVPGGVGP+TIAMLL+NTL+SAK
Sbjct: 338 DYGYRLTGDVCFEEAVKLASAITPVPGGVGPVTIAMLLANTLDSAK 383
>AK119828
Length = 699
Score = 271 bits (693), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 192/292 (65%), Gaps = 5/292 (1%)
Query: 80 AKIIDGKLVAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138
AK+IDG +AK++R +A IA++K P L ++ VGS+ S TY+R KK A E
Sbjct: 84 AKLIDGTALAKEVRARVAQRIAELKQQHSSFQPHLCIMQVGSQSASSTYIRMKKLAAEEC 143
Query: 139 GIKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMN---DENILNAVSIEK 195
G++ V LP+ +SE ++++ + N D SV GILVQLPL H++ + + A+S EK
Sbjct: 144 GMRYTHVQLPDGASEQDIIQRVRELNEDISVDGILVQLPLGDHISSDAERRVTEAISPEK 203
Query: 196 DVDGFHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGV-EIKGKRAVVIGRSNIVGMPA 254
DVDGFH LNIG L+ + +P F+PCTP GC++LL G+ + G RAVVIGRS+IVG P
Sbjct: 204 DVDGFHALNIGHLSSKACNPLFLPCTPAGCIKLLENAGITNMAGLRAVVIGRSDIVGNPV 263
Query: 255 ALLLQKANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPV 314
A LL+ + TV+ HS T QADIVIAA+G + ++ W+K GA +IDVG N V
Sbjct: 264 ASLLRARDCTVTQCHSRTADLPAHLAQADIVIAAMGKPHFIQAEWLKKGAVVIDVGTNFV 323
Query: 315 DDPESPRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKR 366
DD GYRLVGDV +E A+K+A ITP PGGVGPMT+AML+ N L SA+R
Sbjct: 324 DDASKKSGYRLVGDVDFEPATKVASAITPAPGGVGPMTVAMLMENVLISAER 375
>AK121260
Length = 968
Score = 248 bits (633), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 189/300 (63%), Gaps = 13/300 (4%)
Query: 80 AKIIDGKLVAKQIREEIAVEIAKMKDAI-GVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138
++IDGK +AK IR++ + + ++++ PG AV+ VG+R+DS Y+R+K KA E +
Sbjct: 26 TQLIDGKEIAKNIRDKCRLMVEEIRNQQKDFKPGFAVVQVGNREDSNVYIRHKLKAAEEI 85
Query: 139 GIKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLP--HHMNDENILNAVSIEKD 196
GI + V L ++E ++++ I N+DP++HGI+VQLP ++ I N VS +KD
Sbjct: 86 GIDARLVRLDSSTTEPQLIQQIEQLNNDPAIHGIIVQLPFDSVQTIDANRIANTVSPDKD 145
Query: 197 VDGFHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAAL 256
+DG LN G L+ D FVPCTP GC+EL+ G +I+G RAVV+GRS IVG P
Sbjct: 146 IDGLSDLNAGLLSHGNLDKCFVPCTPNGCIELIRATGTQIEGARAVVVGRSKIVGTPMFE 205
Query: 257 LLQKANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDD 316
LL+ NATV+I HS T+ ++I + ADIV+A +G + GSWIK A +ID GI PV +
Sbjct: 206 LLKHYNATVTICHSKTRNIQDIIKDADIVVACLGKPKFIPGSWIKENAVVIDCGITPVQE 265
Query: 317 ------PESPRG----YRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKR 366
E +G +L GDV + +A ITPVPGGVGPMT+A+L+ NT+ +A+R
Sbjct: 266 LDLSKLSEKEKGENGKTKLYGDVDLDSCQGVASWITPVPGGVGPMTVALLMRNTITAAQR 325
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,836,370
Number of extensions: 421427
Number of successful extensions: 955
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 5
Length of query: 371
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 269
Effective length of database: 11,709,973
Effective search space: 3149982737
Effective search space used: 3149982737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)