BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0120900 Os02g0120900|Os02g0120900
(371 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00620.1 | chr4:259265-260788 REVERSE LENGTH=361 494 e-140
AT3G12290.1 | chr3:3919591-3921326 FORWARD LENGTH=300 406 e-114
AT2G38660.1 | chr2:16166392-16168194 FORWARD LENGTH=353 403 e-113
AT4G00600.1 | chr4:255320-256610 REVERSE LENGTH=311 394 e-110
>AT4G00620.1 | chr4:259265-260788 REVERSE LENGTH=361
Length = 360
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 231/292 (79%), Positives = 267/292 (91%)
Query: 80 AKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVG 139
A +IDGK VAK+IR+EI +E+++MK++IGV+PGLAVILVG RKDS TYVRNKKKAC++VG
Sbjct: 69 AIVIDGKAVAKKIRDEITIEVSRMKESIGVIPGLAVILVGDRKDSATYVRNKKKACDSVG 128
Query: 140 IKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVDG 199
IKS+EV L EDSSE+EVLK ++ FN DPSVHGILVQLPLP HM+++NILNAVSIEKDVDG
Sbjct: 129 IKSFEVRLAEDSSEEEVLKSVSGFNDDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDG 188
Query: 200 FHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQ 259
FHPLNIGRLAM+GR+P FVPCTPKGC+ELLHRY +EIKGKRAVVIGRSNIVGMPAALLLQ
Sbjct: 189 FHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNIEIKGKRAVVIGRSNIVGMPAALLLQ 248
Query: 260 KANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDDPES 319
+ +ATVSI+HS TK PEEITR+ADI+I+AVG N+VRGSWIKPGA +IDVGINPV+DP +
Sbjct: 249 REDATVSIIHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVLIDVGINPVEDPSA 308
Query: 320 PRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKRIHKFK 371
RGYRLVGD+CYEEASK+A ITPVPGGVGPMTIAMLLSNTL SAKRIH F+
Sbjct: 309 ARGYRLVGDICYEEASKVASAITPVPGGVGPMTIAMLLSNTLTSAKRIHNFQ 360
>AT3G12290.1 | chr3:3919591-3921326 FORWARD LENGTH=300
Length = 299
Score = 406 bits (1044), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/288 (67%), Positives = 239/288 (82%)
Query: 80 AKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVG 139
AKIIDGK +A IR EIA E+ + + G VPGLAV++VGSRKDSQTYV K+KAC VG
Sbjct: 9 AKIIDGKAIAHTIRSEIAEEVRGLSEKHGKVPGLAVVIVGSRKDSQTYVNTKRKACAEVG 68
Query: 140 IKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVDG 199
IKS++V LPE+ SE +++ + NS+P VHGILVQLPLP H+N+E+IL A+SI+KDVDG
Sbjct: 69 IKSFDVGLPEEVSEADLISKVHELNSNPDVHGILVQLPLPKHINEEHILGAISIDKDVDG 128
Query: 200 FHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQ 259
FHPLNIG+LAM+GR+P F+PCTPKGC+ELL R GV+IKG+RAVV+GRSNIVG+P +LLL
Sbjct: 129 FHPLNIGKLAMKGREPLFLPCTPKGCLELLARSGVKIKGQRAVVVGRSNIVGLPVSLLLL 188
Query: 260 KANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDDPES 319
KA+ATV+ VHS+TK PE I R+ADIVIAA G A++++G+WIKPGAA+IDVG N V DP
Sbjct: 189 KADATVTTVHSHTKDPEAIIREADIVIAACGQAHMIKGNWIKPGAAVIDVGTNAVSDPSK 248
Query: 320 PRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKRI 367
GYRLVGDV + EASK+AG ITPVPGGVGPMT+AMLL NT++ AKR+
Sbjct: 249 KSGYRLVGDVDFAEASKVAGFITPVPGGVGPMTVAMLLRNTVDGAKRV 296
>AT2G38660.1 | chr2:16166392-16168194 FORWARD LENGTH=353
Length = 352
Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/286 (67%), Positives = 229/286 (80%)
Query: 82 IIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVGIK 141
+IDG ++A++IR +I E+ KMK A+G VPGLAV+LVG ++DSQTYVRNK KACE GIK
Sbjct: 65 VIDGNVIAEEIRTKIISEVGKMKKAVGKVPGLAVVLVGEQRDSQTYVRNKIKACEETGIK 124
Query: 142 SYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVDGFH 201
S LPED +E +++ + FN D S+HGILVQLPLP H+N+ ILN V +EKDVDGFH
Sbjct: 125 SVLAELPEDCTEGQIISVLRKFNEDTSIHGILVQLPLPQHLNESKILNMVRLEKDVDGFH 184
Query: 202 PLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQKA 261
PLN+G LAM+GR+P FV CTPKGC+ELL R GVEI GK AVVIGRSNIVG+P +LLLQ+
Sbjct: 185 PLNVGNLAMRGREPLFVSCTPKGCVELLIRTGVEIAGKNAVVIGRSNIVGLPMSLLLQRH 244
Query: 262 NATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDDPESPR 321
+ATVS VH+ TK PE ITR+ADIVIAA G+ NLVRGSW+KPGA +IDVG PV+D
Sbjct: 245 DATVSTVHAFTKDPEHITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVEDSSCEF 304
Query: 322 GYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKRI 367
GYRLVGDVCYEEA +A ITPVPGGVGPMTI MLL NTLE+AKRI
Sbjct: 305 GYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLEAAKRI 350
>AT4G00600.1 | chr4:255320-256610 REVERSE LENGTH=311
Length = 310
Score = 394 bits (1011), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/292 (66%), Positives = 227/292 (77%), Gaps = 36/292 (12%)
Query: 80 AKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVG 139
A +IDGK AK+IR++I +E+++MK++IGVVP
Sbjct: 55 AIVIDGKAEAKKIRDDIKIEVSRMKESIGVVPA--------------------------- 87
Query: 140 IKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVDG 199
EDSSE+EVLK+++ FN DPSVHG+LVQLPLP HM+++NILNAVSIEKDVDG
Sbjct: 88 ---------EDSSEEEVLKYVSGFNDDPSVHGVLVQLPLPSHMDEQNILNAVSIEKDVDG 138
Query: 200 FHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQ 259
FHPLNIGRLAM+GR+P FVPCTPKGC+ELLHRY +E KGKRAVVIGRSNIVGMPAALLLQ
Sbjct: 139 FHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNIEFKGKRAVVIGRSNIVGMPAALLLQ 198
Query: 260 KANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDDPES 319
K +ATVSI+HS T PEE+TRQADI+I+AVG N+VRGSWIKPGA +IDVGI PV+DP +
Sbjct: 199 KEDATVSIIHSRTMNPEELTRQADILISAVGKPNMVRGSWIKPGAVLIDVGIKPVEDPSA 258
Query: 320 PRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAKRIHKFK 371
G RLVGD+CY EASKIA ITPVPG VGPMTIAMLLSNTL SAKRIH F+
Sbjct: 259 AGGERLVGDICYVEASKIASAITPVPGDVGPMTIAMLLSNTLTSAKRIHNFQ 310
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,264,899
Number of extensions: 268834
Number of successful extensions: 800
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 4
Length of query: 371
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,364,969
Effective search space: 2266906599
Effective search space used: 2266906599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)