BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0147200 Os05g0147200|AK064493
         (427 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0147200  Initiation factor eIF-4 gamma, middle domain c...   803   0.0  
Os12g0256300  Similar to Schizosaccharomyces pombe (Fragment)      76   4e-14
Os11g0151600  Similar to Schizosaccharomyces pombe (Fragment)      75   7e-14

>Os05g0147200 Initiation factor eIF-4 gamma, middle domain containing protein
          Length = 427

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/427 (93%), Positives = 398/427 (93%)

Query: 1   MASLVGIDFSAKILASLAKLFEDEYSKEDGXXXXXXXXXXXXXCIFXXXXXXXXXXXXXX 60
           MASLVGIDFSAKILASLAKLFEDEYSKEDG             CIF              
Sbjct: 1   MASLVGIDFSAKILASLAKLFEDEYSKEDGLSLRNLTLLLCYLCIFDVISSDLVYDLLSV 60

Query: 61  XXKRLTELDVSTVLTILQCCGMKLRGDDPSAMKDFVLSIQNSVNQLKLKAHPAGQDNGQA 120
             KRLTELDVSTVLTILQCCGMKLRGDDPSAMKDFVLSIQNSVNQLKLKAHPAGQDNGQA
Sbjct: 61  LSKRLTELDVSTVLTILQCCGMKLRGDDPSAMKDFVLSIQNSVNQLKLKAHPAGQDNGQA 120

Query: 121 EMHSKRMEFMLETICDIKNNKKRPKEDPAHHTRIKKWLQKLKAEDVLLRGLTWNKLLDPD 180
           EMHSKRMEFMLETICDIKNNKKRPKEDPAHHTRIKKWLQKLKAEDVLLRGLTWNKLLDPD
Sbjct: 121 EMHSKRMEFMLETICDIKNNKKRPKEDPAHHTRIKKWLQKLKAEDVLLRGLTWNKLLDPD 180

Query: 181 KKGQWWLSGDVSSTVGNIEEVAAVISKEVVEAQKLVQLAAAQRMNTDIRRAIFCIIMSAE 240
           KKGQWWLSGDVSSTVGNIEEVAAVISKEVVEAQKLVQLAAAQRMNTDIRRAIFCIIMSAE
Sbjct: 181 KKGQWWLSGDVSSTVGNIEEVAAVISKEVVEAQKLVQLAAAQRMNTDIRRAIFCIIMSAE 240

Query: 241 DYVDAFEKLLRLDLSGKQDREIIRVIVDCCLQEKMFNKYYAVLASKLCSHDKNHKFSLQY 300
           DYVDAFEKLLRLDLSGKQDREIIRVIVDCCLQEKMFNKYYAVLASKLCSHDKNHKFSLQY
Sbjct: 241 DYVDAFEKLLRLDLSGKQDREIIRVIVDCCLQEKMFNKYYAVLASKLCSHDKNHKFSLQY 300

Query: 301 CIWDHFKELDNMELNRSMNLAKLVAEMLANFTLSLATLKVVKNLAVEVIPKRTIHFRMLF 360
           CIWDHFKELDNMELNRSMNLAKLVAEMLANFTLSLATLKVVKNLAVEVIPKRTIHFRMLF
Sbjct: 301 CIWDHFKELDNMELNRSMNLAKLVAEMLANFTLSLATLKVVKNLAVEVIPKRTIHFRMLF 360

Query: 361 ETLLQKDDAVVWNVFTRIAGLPELEILRDGLVLFIKQHVIAKDTGKDLASKFKIAKKALD 420
           ETLLQKDDAVVWNVFTRIAGLPELEILRDGLVLFIKQHVIAKDTGKDLASKFKIAKKALD
Sbjct: 361 ETLLQKDDAVVWNVFTRIAGLPELEILRDGLVLFIKQHVIAKDTGKDLASKFKIAKKALD 420

Query: 421 NTAGVLM 427
           NTAGVLM
Sbjct: 421 NTAGVLM 427



>Os12g0256300 Similar to Schizosaccharomyces pombe (Fragment)
          Length = 787

 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 73/137 (53%)

Query: 227 DIRRAIFCIIMSAEDYVDAFEKLLRLDLSGKQDREIIRVIVDCCLQEKMFNKYYAVLASK 286
           ++RR I+  IMS+ D+ +A  KLL++ L   Q+ E+  ++++CC QE+ + +YY +L  +
Sbjct: 543 NLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQR 602

Query: 287 LCSHDKNHKFSLQYCIWDHFKELDNMELNRSMNLAKLVAEMLANFTLSLATLKVVKNLAV 346
            C  +K ++ + + C    +  +  +E N+  N+AK  A +L    L    L  ++    
Sbjct: 603 FCMINKVYQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEE 662

Query: 347 EVIPKRTIHFRMLFETL 363
           +      I  ++LF+ L
Sbjct: 663 DTTSSSRIFIKILFQEL 679



>Os11g0151600 Similar to Schizosaccharomyces pombe (Fragment)
          Length = 376

 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 73/137 (53%)

Query: 227 DIRRAIFCIIMSAEDYVDAFEKLLRLDLSGKQDREIIRVIVDCCLQEKMFNKYYAVLASK 286
           ++RR I+  IMS+ D+ +A  KLL++ L   Q+ E+  ++++CC QE+ + +YY +L  +
Sbjct: 132 NLRRTIYSTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQR 191

Query: 287 LCSHDKNHKFSLQYCIWDHFKELDNMELNRSMNLAKLVAEMLANFTLSLATLKVVKNLAV 346
            C  +K ++ + + C    +  +  +E N+  N+AK  A +L    L    L  ++    
Sbjct: 192 FCMINKVYQDNFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEE 251

Query: 347 EVIPKRTIHFRMLFETL 363
           +      I  ++LF+ L
Sbjct: 252 DTTSSSRIFIKILFQEL 268



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,590,610
Number of extensions: 426932
Number of successful extensions: 1026
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1025
Number of HSP's successfully gapped: 3
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)