Os12g0256300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Schizosaccharomyces pombe (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os12g0256300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Schizosaccharomyces pombe (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.35 | 0.25 | 10.5 | 0.823 | 0.217 | -0.64 | 0.599 | 0.105 | 0.241 | 20.1 | 78.86 | 1355 | -- | -- |
| 28.36 | 0.248 | 10.5 | 0.815 | 0.217 | -0.634 | 0.598 | -- | 0.239 | 20.1 | 78.92 | 1355 | -- | -- |
| 29.42 | 0.253 | 10.5 | 0.806 | 0.219 | -0.646 | -- | 0.0849 | 0.241 | 20.2 | 79 | 1355 | -- | -- |
| 29.42 | 0.253 | 10.5 | 0.798 | 0.217 | -0.636 | -- | -- | 0.239 | 20.3 | 79 | 1353 | -- | -- |
| 31.92 | 0.263 | 10.5 | 0.807 | -- | -0.662 | -- | 0.08 | 0.242 | -- | 79 | 1382 | -- | -- |
| 33.3 | 0.271 | 10.5 | 0.782 | 0.233 | -- | 0.648 | -- | 0.208 | 19.4 | -- | -- | -- | -- |
| 34.45 | 0.275 | 10.5 | 0.766 | 0.233 | -- | -- | -- | 0.209 | 19.5 | -- | -- | -- | -- |
| 31.92 | 0.263 | 10.5 | 0.802 | -- | -0.639 | -- | -- | 0.241 | -- | 77.99 | 1370 | -- | -- |
| 46.1 | 0.316 | 10.5 | -- | 0.211 | -0.559 | -- | -- | 0.147 | 20.3 | 78.33 | 1377 | -- | -- |
| 37.37 | 0.286 | 10.5 | 0.763 | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
| 49.93 | 0.331 | 10.5 | -- | 0.227 | -- | -- | -- | 0.124 | 19.8 | -- | -- | -- | -- |
| 47.71 | 0.322 | 10.5 | -- | -- | -0.594 | -- | -- | 0.167 | -- | 84 | 1430 | -- | -- |
| 52.72 | 0.339 | 10.5 | -- | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 2 | 27.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 5 | 27.61 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 18 | 27.92 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 25 | 27.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 71 | 28.19 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 82 | 28.23 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 122 | 28.38 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 126 | 28.39 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 20 |
| 136 | 28.42 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 18 |
| 158 | 28.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 270 | 28.68 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 279 | 28.69 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 17 |
| 336 | 28.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 355 | 28.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 356 | 28.82 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 375 | 28.83 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 428 | 28.88 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 448 | 28.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 477 | 28.91 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 488 | 28.93 | humidity | 80 | 720 | > th | dose independent | sin | 17 | NA |
| 514 | 28.94 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 528 | 28.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 551 | 28.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 589 | 29.02 | humidity | 70 | 1440 | > th | dose dependent | sin | 23 | NA |
| 602 | 29.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 627 | 29.06 | humidity | 60 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 696 | 29.13 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 11 |
| 772 | 29.20 | humidity | 80 | 720 | < th | dose independent | sin | 18 | NA |
| 780 | 29.20 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 16 |
| 849 | 29.24 | humidity | 60 | 720 | > th | dose dependent | sin | 15 | NA |
| 890 | 29.28 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 5 |