BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0137100 Os05g0137100|AK110841
(86 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0137100 ABC transporter, transmembrane region, type 1 ... 170 2e-43
Os01g0695700 Similar to Multidrug resistance protein 1 homolog 99 5e-22
Os01g0533900 Similar to Multidrug resistance protein 1 homolog 97 3e-21
Os01g0393400 Conserved hypothetical protein 93 5e-20
Os01g0534700 ABC transporter, transmembrane region, type 1 ... 83 5e-17
Os05g0548500 80 3e-16
>Os05g0137100 ABC transporter, transmembrane region, type 1 domain containing
protein
Length = 86
Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 TPGSTQVASFTGEKQAVAKYSRSLKRAYSSGVREGLAAGVGMGTVMVLLFCGYSLGIWYG 60
TPGSTQVASFTGEKQAVAKYSRSLKRAYSSGVREGLAAGVGMGTVMVLLFCGYSLGIWYG
Sbjct: 1 TPGSTQVASFTGEKQAVAKYSRSLKRAYSSGVREGLAAGVGMGTVMVLLFCGYSLGIWYG 60
Query: 61 AKLILEKGYTGAQVMNVIFAVLTGSL 86
AKLILEKGYTGAQVMNVIFAVLTGSL
Sbjct: 61 AKLILEKGYTGAQVMNVIFAVLTGSL 86
>Os01g0695700 Similar to Multidrug resistance protein 1 homolog
Length = 1273
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 62/80 (77%)
Query: 7 VASFTGEKQAVAKYSRSLKRAYSSGVREGLAAGVGMGTVMVLLFCGYSLGIWYGAKLILE 66
V SF GEK+A+ Y+ +K+AY + + EG+ +G G+G++ +++C YSL WYGAKL++
Sbjct: 241 VVSFNGEKRAITMYNTLIKKAYKATIMEGIISGFGIGSIFFVVYCSYSLAFWYGAKLVIS 300
Query: 67 KGYTGAQVMNVIFAVLTGSL 86
KGYTG QV+NV+FA+LTGS+
Sbjct: 301 KGYTGGQVINVVFAILTGSM 320
>Os01g0533900 Similar to Multidrug resistance protein 1 homolog
Length = 835
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 62/80 (77%)
Query: 7 VASFTGEKQAVAKYSRSLKRAYSSGVREGLAAGVGMGTVMVLLFCGYSLGIWYGAKLILE 66
VASF GEKQA+ Y++ +++AY S ++EG+ G+G+GTVM +LFC Y L +WYG+KLI+
Sbjct: 159 VASFNGEKQAINTYNKFIRKAYESTLQEGVVNGLGLGTVMAILFCSYGLAVWYGSKLIVN 218
Query: 67 KGYTGAQVMNVIFAVLTGSL 86
+GY G V+NV+ +V+ G++
Sbjct: 219 RGYNGGIVINVLMSVMMGAM 238
>Os01g0393400 Conserved hypothetical protein
Length = 157
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 52/65 (80%), Gaps = 2/65 (3%)
Query: 24 LKRAYSSGVREGLAAGVGMGTVMVLLFCGYSLGIWYGAKLILEKGY--TGAQVMNVIFAV 81
+K YSS V E +AAG+ MGTV+VLLFCGYSLGI Y AKLILEKGY TGAQVMNVIF V
Sbjct: 42 MKSTYSSNVPENVAAGMAMGTVIVLLFCGYSLGISYDAKLILEKGYTCTGAQVMNVIFVV 101
Query: 82 LTGSL 86
L G L
Sbjct: 102 LIGLL 106
>Os01g0534700 ABC transporter, transmembrane region, type 1 domain containing
protein
Length = 1253
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 59/80 (73%)
Query: 7 VASFTGEKQAVAKYSRSLKRAYSSGVREGLAAGVGMGTVMVLLFCGYSLGIWYGAKLILE 66
V +F GEK+A+ Y++ +K+AY S +++G+ G+G+G+++ + F Y L +WYG++LI+E
Sbjct: 137 VVAFNGEKKAINTYNKFIKKAYESALQQGVINGLGLGSIISVFFSSYGLAVWYGSRLIVE 196
Query: 67 KGYTGAQVMNVIFAVLTGSL 86
+GY G V+NVI A++ ++
Sbjct: 197 RGYNGGIVINVIMAIMISAM 216
>Os05g0548500
Length = 1213
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%)
Query: 7 VASFTGEKQAVAKYSRSLKRAYSSGVREGLAAGVGMGTVMVLLFCGYSLGIWYGAKLILE 66
V SF GEK+A+ Y+ +K+AY V+EG G GMG + ++ F + L +WYG+KL L
Sbjct: 241 VVSFNGEKKAIGLYNDLIKKAYKGAVKEGFIQGFGMGFLNLIYFSSFGLIVWYGSKLSLS 300
Query: 67 KGYTGAQVMNVIFAVLTGS 85
+GY+GA +MN++F ++ G+
Sbjct: 301 RGYSGADIMNILFGIMIGA 319
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,519,131
Number of extensions: 82621
Number of successful extensions: 264
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 6
Length of query: 86
Length of database: 17,035,801
Length adjustment: 56
Effective length of query: 30
Effective length of database: 14,111,817
Effective search space: 423354510
Effective search space used: 423354510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)