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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0137100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ABC transporter, transmembrane region, type 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.03 (0.0508) R2 : 0.516
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.96 (0.182) R2dE : 0.499 R2E : 0.494
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.443 (0.107) R2dN8 : 0.0224 R2N8 : 0.0175
σ : 0.954
deviance : 419.66
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1025
memory length : 303
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.45
open length of G : 7.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.8 0.938 4 -0.294 1.2 3.2 -2.24 2.08 -0.437 6.37 1016 270 0.983 6.88
399.83 0.931 4 -0.353 1.17 3.22 -1.29 -- -0.442 6.15 1017 263 1.18 6.87
403.61 0.936 4.02 -0.384 0.922 3.46 -- -0.646 -0.417 5.39 1018 263 1.12 7.37
403.19 0.935 4 -0.378 1.13 3.2 -- -- -0.443 5.9 1018 264 1.27 6.85
415.39 0.949 4.02 -0.318 -- 3.99 -- -0.298 -0.433 -- 1024 297 0.483 7.58
465.94 1.01 3.98 -0.307 2.72 -- -0.968 -- -0.524 6.26 -- -- -- --
468.25 1.01 3.98 -0.318 2.72 -- -- -- -0.521 6.25 -- -- -- --
415.51 0.949 4.03 -0.405 -- 4.04 -- -- -0.464 -- 1024 301 0.483 7.47
406.96 0.94 4 -- 1.18 3.11 -- -- -0.417 6 1018 261 1.3 6.77
850.84 1.36 4.03 -0.244 -- -- -- -- -0.462 -- -- -- -- --
470.92 1.02 3.98 -- 2.71 -- -- -- -0.485 6.25 -- -- -- --
419.66 0.954 4.03 -- -- 3.96 -- -- -0.443 -- 1025 303 0.45 7.5
852.42 1.36 4.03 -- -- -- -- -- -0.434 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 399.92 atmosphere 1015.0 270 < th dose dependent rect. 1 7
21 413.73 wind 9.0 270 < th dose dependent rect. 1 7
25 414.65 humidity 90.0 270 > th dose independent rect. 4 2
26 414.67 precipitation 0.1 270 < th dose independent rect. 1 7
27 414.67 precipitation 0.1 270 < th dose dependent rect. 1 7
29 414.76 wind 5.0 270 < th dose independent rect. 1 7
30 415.27 humidity 90.0 270 > th dose independent rect. 3 4
39 416.05 humidity 50.0 270 > th dose dependent rect. 1 7
42 416.27 atmosphere 1015.0 10 < th dose dependent rect. 3 7
48 416.77 precipitation 0.1 270 < th dose independent rect. 13 19
49 416.77 precipitation 0.1 270 < th dose dependent rect. 13 19
58 417.12 radiation 40.0 270 < th dose independent rect. 12 20
64 417.38 wind 5.0 270 < th dose dependent rect. 3 4
70 417.66 wind 9.0 270 < th dose independent rect. 12 9
71 417.75 radiation 1.0 90 > th dose independent rect. 9 6
72 417.78 wind 1.0 270 > th dose independent rect. 8 5
73 417.81 humidity 70.0 270 > th dose independent rect. 1 7
76 417.92 atmosphere 1010.0 270 < th dose independent rect. 12 9
77 417.93 wind 9.0 270 < th dose independent rect. 13 19
78 418.01 humidity 80.0 270 > th dose dependent rect. 3 4
81 418.06 atmosphere 995.0 270 > th dose dependent rect. 20 16
88 418.22 humidity 70.0 14400 < th dose independent rect. 18 15
89 418.23 humidity 70.0 14400 > th dose independent rect. 17 16
90 418.25 temperature 10.0 270 > th dose independent rect. 1 7
92 418.25 temperature 30.0 270 < th dose independent rect. 1 7
93 418.25 humidity 50.0 270 > th dose independent rect. 1 7
95 418.25 atmosphere 995.0 270 > th dose independent rect. 1 7
96 418.25 atmosphere 1015.0 270 < th dose independent rect. 1 7
97 418.25 radiation 40.0 270 < th dose independent rect. 1 7
98 418.25 temperature 10.0 270 > th dose independent rect. 8 17
108 418.40 temperature 10.0 270 > th dose independent rect. 12 9
109 418.40 temperature 10.0 270 > th dose independent rect. 21 15
110 418.40 atmosphere 995.0 270 > th dose independent rect. 21 15
126 418.83 radiation 1.0 30 < th dose independent rect. 21 15
129 418.86 temperature 10.0 270 > th dose independent rect. 8 5
130 418.86 atmosphere 995.0 270 > th dose independent rect. 8 5
131 418.86 atmosphere 1015.0 270 < th dose independent rect. 8 5
132 418.86 precipitation 0.1 270 < th dose independent rect. 8 5
134 418.86 temperature 10.0 270 > th dose independent rect. 13 19
135 418.86 precipitation 0.1 270 < th dose dependent rect. 8 5
137 418.92 humidity 70.0 14400 < th dose independent rect. 17 5
149 419.02 radiation 40.0 270 < th dose independent rect. 13 18
153 419.03 precipitation 0.1 270 < th dose independent rect. 12 9
154 419.03 radiation 1.0 30 < th dose independent rect. 21 11
159 419.03 precipitation 0.1 270 < th dose dependent rect. 12 9
163 419.13 precipitation 0.1 270 < th dose independent rect. 8 17
165 419.13 precipitation 0.1 270 < th dose dependent rect. 8 17
175 419.29 humidity 70.0 14400 > th dose independent rect. 17 2
189 419.43 humidity 70.0 14400 > th dose independent rect. 17 9
199 419.47 humidity 70.0 14400 > th dose independent rect. 17 6
212 419.65 wind 9.0 270 < th dose independent rect. 21 15
222 419.80 wind 9.0 270 < th dose independent rect. 8 5
245 420.19 atmosphere 995.0 270 > th dose independent rect. 13 19
252 420.29 humidity 70.0 14400 < th dose independent sin 11 NA
253 420.30 humidity 70.0 14400 < th dose dependent sin 12 NA
256 420.33 wind 9.0 270 < th dose independent rect. 8 17
266 420.50 wind 9.0 270 < th dose independent rect. 11 22
274 420.58 humidity 50.0 90 > th dose independent rect. 15 18
278 420.60 humidity 70.0 14400 < th dose dependent rect. 17 15
283 420.69 wind 1.0 270 > th dose independent rect. 12 9
293 420.75 humidity 70.0 14400 < th dose dependent rect. 17 2
307 420.88 humidity 70.0 14400 < th dose dependent rect. 17 5
320 420.91 wind 3.0 270 < th dose independent rect. 3 4
349 421.02 humidity 90.0 270 > th dose dependent rect. 4 1
352 421.08 humidity 70.0 14400 > th dose independent sin 11 NA
426 421.48 atmosphere 1000.0 270 > th dose independent rect. 19 8
454 421.65 radiation 40.0 10 < th dose independent rect. 13 21
463 421.69 temperature 10.0 270 > th dose dependent rect. 1 7
505 421.87 radiation 1.0 30 > th dose independent rect. 5 4
518 421.91 humidity 60.0 14400 > th dose independent rect. 12 20
521 421.95 humidity 60.0 14400 > th dose independent rect. 12 13
529 421.97 humidity 60.0 14400 > th dose independent rect. 12 8
543 422.02 atmosphere 995.0 270 > th dose independent rect. 12 8
579 422.12 radiation 1.0 30 < th dose dependent rect. 21 15
589 422.17 radiation 1.0 30 < th dose dependent rect. 21 10
590 422.19 humidity 60.0 14400 > th dose independent sin 15 NA
613 422.25 atmosphere 1010.0 270 < th dose independent rect. 13 19
645 422.39 temperature 20.0 10 > th dose independent rect. 5 5
649 422.41 radiation 1.0 30 < th dose independent sin 10 NA
675 422.46 humidity 60.0 14400 < th dose independent rect. 12 20
691 422.50 humidity 60.0 14400 < th dose independent rect. 12 10
703 422.51 humidity 60.0 14400 < th dose independent rect. 12 8
706 422.51 precipitation 0.1 270 < th dose independent rect. 3 15
707 422.51 precipitation 0.1 270 < th dose dependent rect. 3 15
729 422.63 humidity 60.0 14400 > th dose independent rect. 12 3
807 422.82 atmosphere 1000.0 10 > th dose independent rect. 21 8
812 422.83 radiation 40.0 90 < th dose independent rect. 13 8
825 422.87 precipitation 0.1 270 < th dose independent rect. 21 15
828 422.87 precipitation 0.1 270 < th dose dependent rect. 21 15
840 422.90 humidity 60.0 14400 < th dose independent sin 15 NA
842 422.91 radiation 1.0 30 > th dose independent sin 10 NA
902 423.01 humidity 50.0 270 > th dose independent rect. 8 4
952 423.07 humidity 60.0 14400 < th dose independent rect. 12 3
973 423.09 humidity 80.0 14400 < th dose dependent rect. 2 19
978 423.10 humidity 80.0 14400 < th dose dependent rect. 6 15