BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0135700 Os05g0135700|AK103157
(396 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0135700 S-adenosylmethionine synthetase 1 (EC 2.5.1.6)... 787 0.0
Os01g0293000 Similar to S-adenosylmethionine synthetase 1 (... 751 0.0
AK071347 437 e-123
Os01g0207300 Similar to S-adenosylmethionine synthetase 1 (... 315 3e-86
>Os05g0135700 S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine
adenosyltransferase 1) (AdoMet synthetase 1)
Length = 396
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/396 (96%), Positives = 383/396 (96%)
Query: 1 MAALDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEI 60
MAALDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEI
Sbjct: 1 MAALDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEI 60
Query: 61 TTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
TTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEE
Sbjct: 61 TTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
Query: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYR 180
IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYR
Sbjct: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYR 180
Query: 181 NESGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGR 240
NESGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGR
Sbjct: 181 NESGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGR 240
Query: 241 FVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYVARQAAKSIVASG 300
FVIGGPHGDAGLTGRKIIIDTY KDPTKVDRSGAYVARQAAKSIVASG
Sbjct: 241 FVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASG 300
Query: 301 LARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKG 360
LARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKG
Sbjct: 301 LARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKG 360
Query: 361 GNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396
GNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA
Sbjct: 361 GNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396
>Os01g0293000 Similar to S-adenosylmethionine synthetase 1 (EC 2.5.1.6)
(Methionine adenosyltransferase 1) (AdoMet synthetase 1)
(Fragment)
Length = 396
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/396 (90%), Positives = 376/396 (94%)
Query: 1 MAALDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEI 60
MA +DTFLFTSESVNEGHPDKLCDQ+SDAVLDACLAEDP+SKVACETCTKTNMVMVFGEI
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEI 60
Query: 61 TTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
TTKANVDYEKIVR+TCR IGFVS DVGLDA+HCKVLVNIEQQSPDIAQGVHGHFTKRPEE
Sbjct: 61 TTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
Query: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYR 180
IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNG CAWLRPDGKTQVTVEY+
Sbjct: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQ 180
Query: 181 NESGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGR 240
N++GA VP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGR
Sbjct: 181 NDNGAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGR 240
Query: 241 FVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYVARQAAKSIVASG 300
FVIGGPHGDAGLTGRKIIIDTY KDPTKVDRSGAY+ARQAAKSIVA+G
Sbjct: 241 FVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVANG 300
Query: 301 LARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKG 360
LARRCIVQVSYAIGVPEPLSVFVDTYGTG+IPD+EIL+IV ENFDFRPGMIIINLDL +G
Sbjct: 301 LARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRG 360
Query: 361 GNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396
GNGRYLKTAAYGHFGR+DPDFTWEVVKPLKWE+PSA
Sbjct: 361 GNGRYLKTAAYGHFGREDPDFTWEVVKPLKWEEPSA 396
>AK071347
Length = 237
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/226 (93%), Positives = 218/226 (96%)
Query: 3 ALDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITT 62
A +TFLFTSESVNEGHPDKLCDQVSDAVLDACLA+DPDSKVACETCTKTNMVMVFGEITT
Sbjct: 2 AAETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITT 61
Query: 63 KANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 122
KA VDYEKIVR+TCR IGFVS DVGLDAD CKVLVNIEQQSPDIAQGVHGHFTKRPEEIG
Sbjct: 62 KATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 121
Query: 123 AGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNE 182
AGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEY N+
Sbjct: 122 AGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLND 181
Query: 183 SGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLD 228
+GA VPVRVHTVLIST HDETVTNDEIAADLKEHVIKPVIP++YLD
Sbjct: 182 AGAMVPVRVHTVLISTLHDETVTNDEIAADLKEHVIKPVIPDKYLD 227
>Os01g0207300 Similar to S-adenosylmethionine synthetase 1 (EC 2.5.1.6)
(Methionine adenosyltransferase 1) (AdoMet synthetase
1). Splice isoform 2
Length = 164
Score = 315 bits (808), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 150/163 (92%), Positives = 156/163 (95%)
Query: 3 ALDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITT 62
A +TFLFTSES NEGHPDKLCDQVSDAVLD CLA+DP+ KVACETCTKTNMVMVFGEITT
Sbjct: 2 AAETFLFTSESRNEGHPDKLCDQVSDAVLDVCLAQDPEGKVACETCTKTNMVMVFGEITT 61
Query: 63 KANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 122
KA+VDYEKIVR+TCRNIGFVS D+GLDAD CKVLVNIEQQSPDIAQGVHGHFTK PEEIG
Sbjct: 62 KASVDYEKIVRDTCRNIGFVSDDIGLDADRCKVLVNIEQQSPDIAQGVHGHFTKHPEEIG 121
Query: 123 AGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCA 165
AGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCA
Sbjct: 122 AGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCA 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,186,756
Number of extensions: 606553
Number of successful extensions: 1074
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1074
Number of HSP's successfully gapped: 4
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)