Os01g0293000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1) (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0293000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1) (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 259.6 | 0.757 | 10.9 | 5.01 | 0.812 | 1.87 | -0.0744 | -5.26 | -0.0847 | 9.58 | 26.68 | 5987 | -- | -- |
| 255.89 | 0.745 | 10.8 | 4.95 | 0.753 | 2.36 | 0.271 | -- | -0.183 | 9.51 | 20.7 | 17428 | -- | -- |
| 259.62 | 0.75 | 10.9 | 5.01 | 0.813 | 1.87 | -- | -5.26 | -0.085 | 9.58 | 26.68 | 5987 | -- | -- |
| 254.63 | 0.743 | 10.8 | 4.99 | 0.795 | 2.43 | -- | -- | -0.175 | 9.88 | 20.7 | 17567 | -- | -- |
| 297.9 | 0.804 | 10.9 | 5.04 | -- | 1.86 | -- | -5.21 | -0.0391 | -- | 26.75 | 5903 | -- | -- |
| 353.16 | 0.881 | 10.6 | 7.21 | 0.776 | -- | -0.189 | -- | 0.701 | 9.76 | -- | -- | -- | -- |
| 353.29 | 0.88 | 10.6 | 7.2 | 0.777 | -- | -- | -- | 0.701 | 9.76 | -- | -- | -- | -- |
| 293.49 | 0.798 | 10.8 | 4.94 | -- | 2.44 | -- | -- | -0.229 | -- | 20.66 | 17476 | -- | -- |
| 349.94 | 0.871 | 11.1 | -- | 0.838 | 5.83 | -- | -- | -1.52 | 10.1 | 18.58 | 47520 | -- | -- |
| 389.28 | 0.922 | 10.6 | 7.19 | -- | -- | -- | -- | 0.702 | -- | -- | -- | -- | -- |
| 1719.44 | 1.94 | 10.8 | -- | 0.772 | -- | -- | -- | -0.101 | 9.06 | -- | -- | -- | -- |
| 392.26 | 0.922 | 11.1 | -- | -- | 5.81 | -- | -- | -1.51 | -- | 18.56 | 47520 | -- | -- |
| 1753.72 | 1.95 | 10.8 | -- | -- | -- | -- | -- | -0.0961 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 251.60 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 3 | 251.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 6 | 251.77 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 15 | 252.00 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 16 | 252.00 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 26 | 252.11 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 31 | 252.14 | temperature | 25 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 35 | 252.18 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 50 | 252.36 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 70 | 252.53 | temperature | 25 | 14400 | > th | dose independent | sin | 0 | NA |
| 80 | 252.62 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 93 | 252.72 | temperature | 25 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 99 | 252.74 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 108 | 252.82 | temperature | 25 | 14400 | < th | dose independent | sin | 0 | NA |
| 129 | 252.97 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 331 | 254.26 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 519 | 255.21 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 549 | 255.39 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 568 | 255.60 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 571 | 255.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 574 | 255.67 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 583 | 255.72 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 585 | 255.75 | temperature | 25 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 590 | 255.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 601 | 255.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 627 | 256.05 | temperature | 20 | 14400 | > th | dose dependent | rect. | 12 | 21 |
| 642 | 256.11 | temperature | 20 | 14400 | > th | dose dependent | rect. | 23 | 19 |
| 680 | 256.21 | temperature | 20 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 686 | 256.22 | temperature | 20 | 14400 | > th | dose dependent | rect. | 13 | 13 |
| 693 | 256.22 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 21 |
| 735 | 256.27 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |
| 741 | 256.28 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 782 | 256.31 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 806 | 256.34 | temperature | 20 | 14400 | > th | dose dependent | sin | 2 | NA |
| 833 | 256.38 | temperature | 20 | 14400 | > th | dose dependent | sin | 16 | NA |
| 837 | 256.39 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 858 | 256.42 | humidity | 70 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 886 | 256.47 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 5 |