BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0293000 Os01g0293000|J065045I15
(396 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02500.1 | chr1:519037-520218 FORWARD LENGTH=394 719 0.0
AT4G01850.1 | chr4:796298-797479 REVERSE LENGTH=394 716 0.0
AT3G17390.1 | chr3:5952484-5953665 REVERSE LENGTH=394 704 0.0
AT2G36880.1 | chr2:15479721-15480893 REVERSE LENGTH=391 682 0.0
>AT1G02500.1 | chr1:519037-520218 FORWARD LENGTH=394
Length = 393
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/393 (87%), Positives = 363/393 (92%)
Query: 4 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTK 63
++TFLFTSESVNEGHPDKLCDQISDAVLDACL +DP+SKVACETCTKTNMVMVFGEITTK
Sbjct: 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60
Query: 64 ANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 123
A VDYEKIVRDTCR IGFVS+DVGLDA+ CKVLVNIEQQSPDIAQGVHGHFTK PEEIGA
Sbjct: 61 ATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIGA 120
Query: 124 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDN 183
GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNG CAWLRPDGKTQVTVEY ND
Sbjct: 121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDK 180
Query: 184 GAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVI 243
GAMVP+RVHTVLISTQHDETVTNDEIA DLKEHVIKPVIPE+YLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
Query: 244 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIARQAAKSIVANGLAR 303
GGPHGDAGLTGRKIIIDTY KDPTKVDRSGAYI RQAAKS+VANG+AR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGMAR 300
Query: 304 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNG 363
R +VQVSYAIGVPEPLSVFVDTY TG IPD+EIL+IV E+FDFRPGM+ INLDL RGGNG
Sbjct: 301 RALVQVSYAIGVPEPLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNG 360
Query: 364 RYLKTAAYGHFGREDPDFTWEVVKPLKWEEPSA 396
R+LKTAAYGHFGR+DPDFTWEVVKPLKW++P A
Sbjct: 361 RFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
>AT4G01850.1 | chr4:796298-797479 REVERSE LENGTH=394
Length = 393
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/393 (86%), Positives = 363/393 (92%)
Query: 4 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTK 63
++TFLFTSESVNEGHPDKLCDQISDAVLDACL +DP+SKVACETCTKTNMVMVFGEITTK
Sbjct: 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60
Query: 64 ANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 123
A +DYEKIVRDTCR IGF+S+DVGLDA+ CKVLVNIEQQSPDIAQGVHGHFTKRPE+IGA
Sbjct: 61 ATIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 120
Query: 124 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDN 183
GDQGHMFGYATDETPELMPLSHVLATK+GARLTEVRKNG C WLRPDGKTQVTVEY NDN
Sbjct: 121 GDQGHMFGYATDETPELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGKTQVTVEYYNDN 180
Query: 184 GAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVI 243
GAMVP+RVHTVLISTQHDETVTNDEIA DLKEHVIKP+IPE+YLD+KTIFHLNPSGRFVI
Sbjct: 181 GAMVPVRVHTVLISTQHDETVTNDEIARDLKEHVIKPIIPEKYLDDKTIFHLNPSGRFVI 240
Query: 244 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIARQAAKSIVANGLAR 303
GGPHGDAGLTGRKIIIDTY KDPTKVDRSGAYI RQAAKS+VANG+AR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGMAR 300
Query: 304 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNG 363
R +VQVSYAIGVPEPLSVFVDTYGTG IPD+EIL+IV E FDFRPGM+ INLDL RGGNG
Sbjct: 301 RALVQVSYAIGVPEPLSVFVDTYGTGLIPDKEILKIVKETFDFRPGMMTINLDLKRGGNG 360
Query: 364 RYLKTAAYGHFGREDPDFTWEVVKPLKWEEPSA 396
R+ KTAAYGHFGR+DPDFTWEVVKPLKW++P A
Sbjct: 361 RFQKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
>AT3G17390.1 | chr3:5952484-5953665 REVERSE LENGTH=394
Length = 393
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/393 (85%), Positives = 361/393 (91%)
Query: 4 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTK 63
+++FLFTSESVNEGHPDKLCDQISDA+LDACL +DPESKVACETCTKTNMVMVFGEITTK
Sbjct: 1 MESFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTK 60
Query: 64 ANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 123
ANVDYE+IVR TCR IGFVS DVGLDA++CKVLVNIEQQSPDIAQGVHGH TK+PEE+GA
Sbjct: 61 ANVDYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEVGA 120
Query: 124 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDN 183
GDQGHMFGYATDETPELMPL+HVLATKLGA+LTEVRKNG C WLRPDGKTQVT+EY N++
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYINES 180
Query: 184 GAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVI 243
GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE+YLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
Query: 244 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIARQAAKSIVANGLAR 303
GGPHGDAGLTGRKIIIDTY KDPTKVDRSGAYI RQAAKSIVA+GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR 300
Query: 304 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNG 363
R IVQVSYAIGVPEPLSVFVD+YGTGKIPD+EIL IV E+FDFRPGMI INLDL RGGNG
Sbjct: 301 RVIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILEIVKESFDFRPGMISINLDLKRGGNG 360
Query: 364 RYLKTAAYGHFGREDPDFTWEVVKPLKWEEPSA 396
R+LKTAAYGHFGR+D DFTWEVVKPLK + A
Sbjct: 361 RFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQA 393
>AT2G36880.1 | chr2:15479721-15480893 REVERSE LENGTH=391
Length = 390
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/387 (83%), Positives = 348/387 (89%)
Query: 4 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTK 63
++TFLFTSESVNEGHPDKLCDQISDA+LDACL +DPESKVACETCTKTNMVMVFGEITT
Sbjct: 1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTA 60
Query: 64 ANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 123
A VDYEKIVR TCR IGF+S DVGLDA+ C VLVNIEQQSPDIAQGVHGH TK+PE+IGA
Sbjct: 61 AKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIGA 120
Query: 124 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDN 183
GDQGHMFGYATDETPELMPL+HVLATKLGA+LTEVRKN C WLRPDGKTQVTVEY+ND
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDG 180
Query: 184 GAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVI 243
GAM+P+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP +YLD+ TIFHLNPSGRFVI
Sbjct: 181 GAMIPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPAKYLDDNTIFHLNPSGRFVI 240
Query: 244 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIARQAAKSIVANGLAR 303
GGPHGDAGLTGRKIIIDTY KDPTKVDRSGAYI RQAAKS+VA GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300
Query: 304 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNG 363
RCIVQVSYAIGVPEPLSVFVDTY TG IPD++IL ++ E FDFRPGM+ INLDL RGGN
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNF 360
Query: 364 RYLKTAAYGHFGREDPDFTWEVVKPLK 390
R+ KTAAYGHFGR+DPDFTWEVVKPLK
Sbjct: 361 RFQKTAAYGHFGRDDPDFTWEVVKPLK 387
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,956,255
Number of extensions: 378646
Number of successful extensions: 705
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 4
Length of query: 396
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,337,553
Effective search space: 2459578135
Effective search space used: 2459578135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)