Os01g0207300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1). Splice isoform 2.
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Os01g0207300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 200.89 | 0.666 | 10.9 | 1.96 | 3.5 | -2.65 | 0.44 | 1.67 | 0.549 | 6.92 | 17.06 | 10 | -- | -- |
| 203.93 | 0.67 | 10.9 | 1.68 | 3.51 | -2.54 | 0.426 | -- | 0.47 | 6.92 | 17.47 | 11 | -- | -- |
| 201.28 | 0.661 | 10.9 | 1.97 | 3.51 | -2.6 | -- | 1.76 | 0.541 | 6.9 | 17.42 | 10 | -- | -- |
| 204.12 | 0.665 | 10.9 | 1.7 | 3.5 | -2.59 | -- | -- | 0.473 | 6.9 | 17.1 | 10 | -- | -- |
| 519.49 | 1.06 | 10.9 | 2.53 | -- | -4.64 | -- | 4.49 | 0.671 | -- | 24.2 | 385 | -- | -- |
| 284.9 | 0.791 | 11 | 1.15 | 3.89 | -- | 0.345 | -- | 0.062 | 6.13 | -- | -- | -- | -- |
| 285.19 | 0.791 | 11 | 1.15 | 3.89 | -- | -- | -- | 0.0606 | 6.13 | -- | -- | -- | -- |
| 533.13 | 1.08 | 11 | 2 | -- | -4.3 | -- | -- | 0.583 | -- | 24.2 | 378 | -- | -- |
| 272.37 | 0.769 | 11 | -- | 3.62 | -1.74 | -- | -- | 0.176 | 6.68 | 19.18 | 3 | -- | -- |
| 1071.1 | 1.53 | 11.1 | 1.26 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 320.12 | 0.837 | 11 | -- | 3.91 | -- | -- | -- | -0.0676 | 6.11 | -- | -- | -- | -- |
| 634.84 | 1.17 | 11 | -- | -- | -4.01 | -- | -- | 0.307 | -- | 24.4 | 379 | -- | -- |
| 1113.06 | 1.56 | 11.1 | -- | -- | -- | -- | -- | 0.00752 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 24 | 201.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 34 | 202.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 36 | 202.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 37 | 202.72 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 38 | 202.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 42 | 203.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 56 | 203.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 58 | 203.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 60 | 203.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 75 | 204.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 82 | 204.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 87 | 204.58 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 88 | 204.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 92 | 204.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 96 | 204.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 106 | 204.79 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 121 | 204.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 138 | 205.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 188 | 205.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 190 | 205.65 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 191 | 205.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 196 | 205.68 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 209 | 205.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 230 | 206.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 262 | 206.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 266 | 206.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 302 | 206.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 343 | 207.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 481 | 208.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 483 | 208.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 520 | 208.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 526 | 208.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 539 | 208.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 540 | 208.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 548 | 208.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 582 | 209.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 662 | 209.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 665 | 209.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 676 | 209.56 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 701 | 209.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 731 | 209.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 739 | 209.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 754 | 210.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 10 |
| 792 | 210.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 839 | 210.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 841 | 210.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 889 | 210.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 920 | 210.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 950 | 211.06 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |