BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0207300 Os01g0207300|Os01g0207300
(164 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02500.1 | chr1:519037-520218 FORWARD LENGTH=394 315 5e-87
AT4G01850.1 | chr4:796298-797479 REVERSE LENGTH=394 313 2e-86
AT3G17390.1 | chr3:5952484-5953665 REVERSE LENGTH=394 303 2e-83
AT2G36880.1 | chr2:15479721-15480893 REVERSE LENGTH=391 298 1e-81
>AT1G02500.1 | chr1:519037-520218 FORWARD LENGTH=394
Length = 393
Score = 315 bits (808), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 150/161 (93%), Positives = 155/161 (96%)
Query: 4 ETFLFTSESRNEGHPDKLCDQVSDAVLDVCLAQDPEGKVACETCTKTNMVMVFGEITTKA 63
ETFLFTSES NEGHPDKLCDQ+SDAVLD CL QDP+ KVACETCTKTNMVMVFGEITTKA
Sbjct: 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKA 61
Query: 64 SVDYEKIVRDTCRNIGFVSDDIGLDADRCKVLVNIEQQSPDIAQGVHGHFTKHPEEIGAG 123
+VDYEKIVRDTCR IGFVSDD+GLDAD+CKVLVNIEQQSPDIAQGVHGHFTK PEEIGAG
Sbjct: 62 TVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIGAG 121
Query: 124 DQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCA 164
DQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCA
Sbjct: 122 DQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCA 162
>AT4G01850.1 | chr4:796298-797479 REVERSE LENGTH=394
Length = 393
Score = 313 bits (803), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 145/160 (90%), Positives = 155/160 (96%)
Query: 4 ETFLFTSESRNEGHPDKLCDQVSDAVLDVCLAQDPEGKVACETCTKTNMVMVFGEITTKA 63
ETFLFTSES NEGHPDKLCDQ+SDAVLD CL QDP+ KVACETCTKTNMVMVFGEITTKA
Sbjct: 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKA 61
Query: 64 SVDYEKIVRDTCRNIGFVSDDIGLDADRCKVLVNIEQQSPDIAQGVHGHFTKHPEEIGAG 123
++DYEKIVRDTCR+IGF+SDD+GLDAD+CKVLVNIEQQSPDIAQGVHGHFTK PE+IGAG
Sbjct: 62 TIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAG 121
Query: 124 DQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTC 163
DQGHMFGYATDETPELMPLSHVLATK+GARLTEVRKNGTC
Sbjct: 122 DQGHMFGYATDETPELMPLSHVLATKIGARLTEVRKNGTC 161
>AT3G17390.1 | chr3:5952484-5953665 REVERSE LENGTH=394
Length = 393
Score = 303 bits (777), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 141/160 (88%), Positives = 150/160 (93%)
Query: 4 ETFLFTSESRNEGHPDKLCDQVSDAVLDVCLAQDPEGKVACETCTKTNMVMVFGEITTKA 63
E+FLFTSES NEGHPDKLCDQ+SDA+LD CL QDPE KVACETCTKTNMVMVFGEITTKA
Sbjct: 2 ESFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKA 61
Query: 64 SVDYEKIVRDTCRNIGFVSDDIGLDADRCKVLVNIEQQSPDIAQGVHGHFTKHPEEIGAG 123
+VDYE+IVR TCR IGFVS D+GLDAD CKVLVNIEQQSPDIAQGVHGH TK PEE+GAG
Sbjct: 62 NVDYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEVGAG 121
Query: 124 DQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTC 163
DQGHMFGYATDETPELMPL+HVLATKLGA+LTEVRKNGTC
Sbjct: 122 DQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTC 161
>AT2G36880.1 | chr2:15479721-15480893 REVERSE LENGTH=391
Length = 390
Score = 298 bits (762), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 139/160 (86%), Positives = 147/160 (91%)
Query: 4 ETFLFTSESRNEGHPDKLCDQVSDAVLDVCLAQDPEGKVACETCTKTNMVMVFGEITTKA 63
ETFLFTSES NEGHPDKLCDQ+SDA+LD CL QDPE KVACETCTKTNMVMVFGEITT A
Sbjct: 2 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTAA 61
Query: 64 SVDYEKIVRDTCRNIGFVSDDIGLDADRCKVLVNIEQQSPDIAQGVHGHFTKHPEEIGAG 123
VDYEKIVR TCR IGF+S D+GLDAD+C VLVNIEQQSPDIAQGVHGH TK PE+IGAG
Sbjct: 62 KVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIGAG 121
Query: 124 DQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTC 163
DQGHMFGYATDETPELMPL+HVLATKLGA+LTEVRKN TC
Sbjct: 122 DQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTC 161
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,641,273
Number of extensions: 142594
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 4
Length of query: 164
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 73
Effective length of database: 8,611,713
Effective search space: 628655049
Effective search space used: 628655049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)