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Os05g0135700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0191) R2 : 0.539
β1 : 0.7 (0.0697) R2dD : 0.106 R2D : -0.00431
β2 : 0.841 (0.0456) R2dC : 0.345 R2C : 0.297
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.472 (0.0406) R2dN8 : 0.183 R2N8 : 0.0923
σ : 0.358
deviance : 58.38
__
_____
C
peak time of C : 10.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.31 0.337 13.4 0.27 0.842 0.0056 -0.153 -1.89 0.317 10.6 18.7 7356 -- --
51.27 0.333 13.4 0.166 0.847 0.858 -0.196 -- 0.325 10.7 14.49 29404 -- --
51.4 0.334 13.4 0.264 0.843 0.00733 -- -1.88 0.316 10.6 18.73 7340 -- --
51.37 0.334 13.4 0.143 0.839 0.879 -- -- 0.312 10.6 14.5 31964 -- --
94.12 0.454 13.4 0.546 -- 0.563 -- -0.0354 0.408 -- 18.8 8764 -- --
58.27 0.358 13.3 0.706 0.84 -- -0.162 -- 0.473 10.6 -- -- -- --
58.38 0.358 13.3 0.7 0.841 -- -- -- 0.472 10.6 -- -- -- --
94.12 0.454 13.4 0.55 -- 0.569 -- -- 0.409 -- 18.8 8764 -- --
51.4 0.334 13.4 -- 0.831 0.952 -- -- 0.282 10.5 14.81 32024 -- --
101.87 0.472 13.4 0.684 -- -- -- -- 0.468 -- -- -- -- --
71.28 0.395 13.4 -- 0.836 -- -- -- 0.394 10.5 -- -- -- --
95.19 0.454 13.4 -- -- 0.924 -- -- 0.278 -- 14.8 31903 -- --
114.21 0.499 13.4 -- -- -- -- -- 0.392 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.15 temperature 10.0 10 > th dose dependent rect. 19 23
2 49.16 temperature 15.0 90 > th dose dependent rect. 19 22
4 49.35 radiation 20.0 14400 < th dose independent rect. 21 9
6 49.41 radiation 30.0 4320 < th dose independent rect. 16 5
10 49.70 temperature 20.0 90 > th dose independent rect. 19 22
15 49.78 temperature 20.0 10 > th dose independent rect. 20 21
20 49.91 radiation 10.0 4320 < th dose independent rect. 18 3
24 50.10 radiation 30.0 4320 < th dose independent rect. 16 9
27 50.18 humidity 60.0 43200 < th dose independent rect. 9 1
29 50.18 radiation 30.0 4320 < th dose independent rect. 16 15
30 50.19 humidity 60.0 43200 > th dose independent rect. 9 1
36 50.27 radiation 1.0 14400 < th dose dependent rect. 7 1
44 50.37 wind 1.0 43200 > th dose independent rect. 23 3
51 50.48 radiation 1.0 14400 < th dose independent rect. 7 2
53 50.49 humidity 50.0 43200 < th dose independent rect. 16 18
56 50.54 radiation 1.0 14400 > th dose independent rect. 7 2
57 50.54 humidity 60.0 43200 < th dose independent rect. 8 3
58 50.54 humidity 80.0 43200 < th dose independent rect. 2 7
61 50.55 humidity 50.0 43200 < th dose independent rect. 17 16
63 50.56 humidity 50.0 43200 < th dose dependent rect. 16 18
66 50.58 humidity 50.0 43200 < th dose independent rect. 14 1
68 50.58 atmosphere 1015.0 43200 < th dose independent rect. 8 4
69 50.59 atmosphere 1015.0 43200 > th dose independent rect. 8 3
74 50.59 humidity 50.0 43200 > th dose independent rect. 16 17
89 50.62 atmosphere 1015.0 43200 > th dose dependent rect. 1 1
91 50.63 humidity 50.0 43200 > th dose independent rect. 12 1
111 50.66 atmosphere 1015.0 43200 > th dose independent rect. 9 1
112 50.66 atmosphere 1015.0 43200 < th dose independent rect. 9 1
134 50.68 wind 3.0 43200 < th dose dependent rect. 11 1
135 50.69 atmosphere 1015.0 43200 < th dose independent rect. 11 2
140 50.70 humidity 50.0 43200 < th dose independent rect. 16 3
149 50.71 humidity 80.0 43200 > th dose independent rect. 3 1
151 50.71 atmosphere 1015.0 43200 > th dose independent rect. 11 2
165 50.72 humidity 80.0 43200 > th dose independent rect. 3 5
169 50.72 atmosphere 1015.0 43200 > th dose independent rect. 1 11
191 50.74 atmosphere 1015.0 43200 < th dose independent rect. 1 11
211 50.76 humidity 80.0 43200 < th dose independent rect. 3 1
287 50.80 precipitation 0.1 43200 > th dose independent rect. 23 1
288 50.80 humidity 50.0 43200 > th dose independent rect. 16 4
304 50.80 precipitation 0.1 43200 > th dose dependent rect. 23 1
306 50.81 atmosphere 1015.0 43200 > th dose independent sin 3 NA
340 50.82 atmosphere 1015.0 43200 > th dose independent rect. 1 6
354 50.82 wind 1.0 43200 < th dose dependent rect. 9 19
365 50.83 humidity 80.0 43200 > th dose independent rect. 19 13
376 50.84 atmosphere 1015.0 43200 < th dose independent sin 2 NA
378 50.84 wind 1.0 43200 < th dose independent rect. 23 3
382 50.84 atmosphere 1015.0 43200 < th dose independent rect. 1 5
402 50.84 humidity 60.0 43200 < th dose dependent rect. 11 1
408 50.85 atmosphere 1015.0 43200 < th dose independent rect. 2 2
418 50.85 radiation 1.0 43200 > th dose independent rect. 18 11
429 50.86 wind 3.0 43200 > th dose independent rect. 12 2
440 50.86 humidity 50.0 43200 > th dose independent rect. 16 7
482 50.87 radiation 10.0 4320 < th dose independent rect. 18 12
486 50.87 temperature 20.0 270 > th dose independent rect. 22 15
538 50.90 precipitation 0.1 43200 < th dose independent rect. 23 1
547 50.90 radiation 1.0 43200 < th dose independent rect. 18 11
550 50.90 precipitation 0.1 43200 < th dose dependent rect. 23 1
580 50.91 temperature 20.0 10 > th dose dependent rect. 7 23
581 50.92 atmosphere 1010.0 43200 < th dose independent rect. 24 1
588 50.92 wind 3.0 43200 > th dose independent rect. 9 8
597 50.92 wind 3.0 43200 > th dose independent rect. 8 13
605 50.93 atmosphere 1010.0 43200 > th dose independent rect. 22 1
612 50.93 radiation 10.0 4320 < th dose independent rect. 18 7
628 50.93 wind 5.0 43200 < th dose dependent rect. 9 12
644 50.94 wind 3.0 43200 > th dose independent rect. 6 15
724 50.97 wind 3.0 43200 < th dose independent rect. 12 1
727 50.97 atmosphere 1015.0 43200 > th dose independent rect. 4 1
729 50.97 atmosphere 1010.0 43200 < th dose independent rect. 18 1
737 50.97 wind 3.0 43200 < th dose independent rect. 11 3
830 50.99 wind 3.0 43200 < th dose independent rect. 9 8
855 50.99 wind 3.0 43200 < th dose independent rect. 8 13
872 50.99 wind 5.0 43200 < th dose dependent rect. 6 15
874 51.00 wind 3.0 43200 > th dose independent sin 22 NA
915 51.00 wind 5.0 43200 < th dose dependent sin 21 NA
917 51.00 temperature 10.0 43200 > th dose dependent rect. 1 1
918 51.00 temperature 30.0 43200 < th dose dependent rect. 1 1
924 51.01 humidity 50.0 43200 > th dose independent sin 0 NA
969 51.01 wind 5.0 43200 < th dose dependent rect. 9 8
979 51.02 atmosphere 1010.0 43200 > th dose independent rect. 18 1