BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0135700 Os05g0135700|AK103157
(396 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02500.1 | chr1:519037-520218 FORWARD LENGTH=394 721 0.0
AT4G01850.1 | chr4:796298-797479 REVERSE LENGTH=394 719 0.0
AT3G17390.1 | chr3:5952484-5953665 REVERSE LENGTH=394 719 0.0
AT2G36880.1 | chr2:15479721-15480893 REVERSE LENGTH=391 689 0.0
>AT1G02500.1 | chr1:519037-520218 FORWARD LENGTH=394
Length = 393
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/393 (88%), Positives = 364/393 (92%)
Query: 4 LDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTK 63
++TFLFTSESVNEGHPDKLCDQ+SDAVLDACL +DPDSKVACETCTKTNMVMVFGEITTK
Sbjct: 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60
Query: 64 ANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 123
A VDYEKIVR+TCR IGFVS DVGLDAD CKVLVNIEQQSPDIAQGVHGHFTK PEEIGA
Sbjct: 61 ATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIGA 120
Query: 124 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNES 183
GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEY N+
Sbjct: 121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDK 180
Query: 184 GARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVI 243
GA VP+RVHTVLISTQHDETVTNDEIA DLKEHVIKPVIPE+YLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
Query: 244 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYVARQAAKSIVASGLAR 303
GGPHGDAGLTGRKIIIDTY KDPTKVDRSGAY+ RQAAKS+VA+G+AR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGMAR 300
Query: 304 RCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNG 363
R +VQVSYAIGVPEPLSVFVDTY TG IPDKEILKIVKE+FDFRPGM+ INLDLK+GGNG
Sbjct: 301 RALVQVSYAIGVPEPLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNG 360
Query: 364 RYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396
R+LKTAAYGHFGRDDPDFTWEVVKPLKW+KP A
Sbjct: 361 RFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
>AT4G01850.1 | chr4:796298-797479 REVERSE LENGTH=394
Length = 393
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/393 (86%), Positives = 365/393 (92%)
Query: 4 LDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTK 63
++TFLFTSESVNEGHPDKLCDQ+SDAVLDACL +DPDSKVACETCTKTNMVMVFGEITTK
Sbjct: 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60
Query: 64 ANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 123
A +DYEKIVR+TCR+IGF+S DVGLDAD CKVLVNIEQQSPDIAQGVHGHFTKRPE+IGA
Sbjct: 61 ATIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 120
Query: 124 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNES 183
GDQGHMFGYATDETPELMPLSHVLATK+GARLTEVRKNGTC WLRPDGKTQVTVEY N++
Sbjct: 121 GDQGHMFGYATDETPELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGKTQVTVEYYNDN 180
Query: 184 GARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVI 243
GA VPVRVHTVLISTQHDETVTNDEIA DLKEHVIKP+IPE+YLD+KTIFHLNPSGRFVI
Sbjct: 181 GAMVPVRVHTVLISTQHDETVTNDEIARDLKEHVIKPIIPEKYLDDKTIFHLNPSGRFVI 240
Query: 244 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYVARQAAKSIVASGLAR 303
GGPHGDAGLTGRKIIIDTY KDPTKVDRSGAY+ RQAAKS+VA+G+AR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGMAR 300
Query: 304 RCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNG 363
R +VQVSYAIGVPEPLSVFVDTYGTG IPDKEILKIVKE FDFRPGM+ INLDLK+GGNG
Sbjct: 301 RALVQVSYAIGVPEPLSVFVDTYGTGLIPDKEILKIVKETFDFRPGMMTINLDLKRGGNG 360
Query: 364 RYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396
R+ KTAAYGHFGRDDPDFTWEVVKPLKW+KP A
Sbjct: 361 RFQKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
>AT3G17390.1 | chr3:5952484-5953665 REVERSE LENGTH=394
Length = 393
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/393 (87%), Positives = 366/393 (93%)
Query: 4 LDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTK 63
+++FLFTSESVNEGHPDKLCDQ+SDA+LDACL +DP+SKVACETCTKTNMVMVFGEITTK
Sbjct: 1 MESFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTK 60
Query: 64 ANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 123
ANVDYE+IVR+TCR IGFVSADVGLDAD+CKVLVNIEQQSPDIAQGVHGH TK+PEE+GA
Sbjct: 61 ANVDYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEVGA 120
Query: 124 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNES 183
GDQGHMFGYATDETPELMPL+HVLATKLGA+LTEVRKNGTC WLRPDGKTQVT+EY NES
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYINES 180
Query: 184 GARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVI 243
GA VPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE+YLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
Query: 244 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYVARQAAKSIVASGLAR 303
GGPHGDAGLTGRKIIIDTY KDPTKVDRSGAY+ RQAAKSIVASGLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR 300
Query: 304 RCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNG 363
R IVQVSYAIGVPEPLSVFVD+YGTG+IPDKEIL+IVKE+FDFRPGMI INLDLK+GGNG
Sbjct: 301 RVIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILEIVKESFDFRPGMISINLDLKRGGNG 360
Query: 364 RYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396
R+LKTAAYGHFGRDD DFTWEVVKPLK K A
Sbjct: 361 RFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQA 393
>AT2G36880.1 | chr2:15479721-15480893 REVERSE LENGTH=391
Length = 390
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/387 (84%), Positives = 352/387 (90%)
Query: 4 LDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTK 63
++TFLFTSESVNEGHPDKLCDQ+SDA+LDACL +DP+SKVACETCTKTNMVMVFGEITT
Sbjct: 1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTA 60
Query: 64 ANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 123
A VDYEKIVR TCR IGF+SADVGLDAD C VLVNIEQQSPDIAQGVHGH TK+PE+IGA
Sbjct: 61 AKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIGA 120
Query: 124 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNES 183
GDQGHMFGYATDETPELMPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVTVEY+N+
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDG 180
Query: 184 GARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVI 243
GA +P+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP +YLD+ TIFHLNPSGRFVI
Sbjct: 181 GAMIPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPAKYLDDNTIFHLNPSGRFVI 240
Query: 244 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYVARQAAKSIVASGLAR 303
GGPHGDAGLTGRKIIIDTY KDPTKVDRSGAY+ RQAAKS+VA+GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300
Query: 304 RCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNG 363
RCIVQVSYAIGVPEPLSVFVDTY TG IPDK+IL ++KE FDFRPGM+ INLDLK+GGN
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNF 360
Query: 364 RYLKTAAYGHFGRDDPDFTWEVVKPLK 390
R+ KTAAYGHFGRDDPDFTWEVVKPLK
Sbjct: 361 RFQKTAAYGHFGRDDPDFTWEVVKPLK 387
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,970,182
Number of extensions: 383757
Number of successful extensions: 747
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 4
Length of query: 396
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,337,553
Effective search space: 2459578135
Effective search space used: 2459578135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)