BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0682100 Os04g0682100|AK070539
(145 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0682100 Eukaryotic phosphomannomutase family protein 274 1e-74
Os02g0640000 C2 calcium/lipid-binding region, CaLB domain c... 187 2e-48
Os04g0531100 C2 calcium/lipid-binding region, CaLB domain c... 177 3e-45
Os01g0841700 RPP17-1 107 2e-24
AK062533 64 3e-11
>Os04g0682100 Eukaryotic phosphomannomutase family protein
Length = 145
Score = 274 bits (701), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/145 (92%), Positives = 134/145 (92%)
Query: 1 MVHGKLEVLLVCAKGLEDTDFLNDMDPYVILTCRTQEQKSSVAKGAGSEPEWNETFVFTV 60
MVHGKLEVLLVCAKGLEDTDFLNDMDPYVILTCRTQEQKSSVAKGAGSEPEWNETFVFTV
Sbjct: 1 MVHGKLEVLLVCAKGLEDTDFLNDMDPYVILTCRTQEQKSSVAKGAGSEPEWNETFVFTV 60
Query: 61 SDDVPQLNVKIMDSDAFSADDFVGEANIPLEPVFLEGSLPPAVHRVVKEEKYCGEIKVAL 120
SDDVPQLNVKIMDSDAFSADDFVGEANIPLEPVFLEGSLPPAVHRVVKEEKYCGEIKVAL
Sbjct: 61 SDDVPQLNVKIMDSDAFSADDFVGEANIPLEPVFLEGSLPPAVHRVVKEEKYCGEIKVAL 120
Query: 121 TFTPAAETRXXXXXXXXXXXYSSWN 145
TFTPAAETR YSSWN
Sbjct: 121 TFTPAAETRHHHNHENEGEGYSSWN 145
>Os02g0640000 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 143
Score = 187 bits (475), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 87/124 (70%), Positives = 102/124 (82%)
Query: 1 MVHGKLEVLLVCAKGLEDTDFLNDMDPYVILTCRTQEQKSSVAKGAGSEPEWNETFVFTV 60
MVHG LEVLLV AKGLE+TD+L +MDPY IL CR+QEQ+SS+A G GS PEWNE FVFTV
Sbjct: 1 MVHGTLEVLLVGAKGLENTDYLCNMDPYAILKCRSQEQRSSIASGKGSNPEWNENFVFTV 60
Query: 61 SDDVPQLNVKIMDSDAFSADDFVGEANIPLEPVFLEGSLPPAVHRVVKEEKYCGEIKVAL 120
SD +L +K++DSD SADDFVGEA IPLE V+ EGS+PP ++ VVK+E YCGEIKV L
Sbjct: 61 SDKATELLIKLLDSDTGSADDFVGEATIPLEAVYTEGSIPPTLYNVVKDEHYCGEIKVGL 120
Query: 121 TFTP 124
TFTP
Sbjct: 121 TFTP 124
>Os04g0531100 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 144
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 102/124 (82%)
Query: 1 MVHGKLEVLLVCAKGLEDTDFLNDMDPYVILTCRTQEQKSSVAKGAGSEPEWNETFVFTV 60
MV G LEVLLV AKGLE+TD+L +MDPY +L CR+QEQKSSVA G GS+PEWNETF+F+V
Sbjct: 1 MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 60
Query: 61 SDDVPQLNVKIMDSDAFSADDFVGEANIPLEPVFLEGSLPPAVHRVVKEEKYCGEIKVAL 120
+ + +L +K+MDSD+ + DDFVGEA I LE ++ EGS+PP V+ VVKEE+Y GEIKV L
Sbjct: 61 THNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGSIPPTVYNVVKEEEYRGEIKVGL 120
Query: 121 TFTP 124
TFTP
Sbjct: 121 TFTP 124
>Os01g0841700 RPP17-1
Length = 159
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 14/140 (10%)
Query: 4 GKLEVLLVCAKGLEDTDFLNDM---DPYVILTCRTQEQKSSVAKGAGSEPEWNETFVFTV 60
G LEV LV AKGL DFL ++ DPYV++ R+QE+KSSVA+ G P WNE F F +
Sbjct: 5 GVLEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQI 64
Query: 61 SDDVP----QLNVKIMDSDAFSADDFVGEANIPLEPVFLEG------SLPPAVHRVVKEE 110
+ +L +++MD D FS DDF+GEA I + + G + + HRVV +
Sbjct: 65 NSTAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEMSESKHRVVLAD 124
Query: 111 K-YCGEIKVALTFTPAAETR 129
K Y GEI+V+LTFT +A+ +
Sbjct: 125 KTYHGEIRVSLTFTASAKAQ 144
>AK062533
Length = 145
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 13 AKGLEDTDFLNDMDPYVILTCRTQEQKSSVAKGAGSEPEWNETFVFTVSDDVPQLNVKIM 72
AK DTD MDPY ++ K V K G P+W++T F + P +++
Sbjct: 12 AKLTHDTDIFTKMDPYCQFLIGDRKVKGEVCKHGGKHPKWHDTITFERHHE-PICYIELK 70
Query: 73 DSDAFSADDFVGEANIPLEPVFLEGSLPPAVHRVVKEEKYCGEIKVALTFTPAAETR 129
D D FS+DD +G I L GS+ + + ++K GE+ + + +TP+AE +
Sbjct: 71 DHDTFSSDDIIGVGQIDLN-ALPPGSVTAKWYPLFWKQKPAGEVLLEIIWTPSAEQK 126
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,877,460
Number of extensions: 191656
Number of successful extensions: 481
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 5
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)