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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0531100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.72 (0.0408) R2 : 0.549
β1 : -0.461 (0.213) R2dD : 0.00998 R2D : 0.0655
β2 : 1.04 (0.0962) R2dC : 0.118 R2C : 0.111
β3 : -2.77 (0.182) R2dE : 0.241 R2E : 0.278
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.63 (0.922) R2dD*E : 0.107 R2D*E : 0.146
γ1 : -0.206 (0.0864) R2dN8 : 0.00761 R2N8 : -0.00528
σ : 0.754
deviance : 262.02
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_____
C
peak time of C : 11.9
E
wheather : radiation
threshold : 0.8628
memory length : 1442
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 1.95

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254.83 0.75 9.72 -0.518 1.04 -2.83 1.29 -6.63 -0.208 11.9 0.8849 1442 18 1.91
277.65 0.776 9.7 -1.72 1.01 -2.51 1.3 -- -0.396 11.6 0.9669 1434 17.8 2.33
262.02 0.754 9.72 -0.461 1.04 -2.77 -- -6.63 -0.206 11.9 0.8628 1442 18 1.95
285.03 0.786 9.7 -1.65 1.03 -2.44 -- -- -0.395 11.3 0.9153 1433 17.8 2.69
326.73 0.842 9.72 -0.657 -- -3.14 -- -6.25 -0.172 -- 0.95 1445 18 3.38
407.96 0.947 9.66 -1.97 1.03 -- 1.01 -- -0.244 11.6 -- -- -- --
412.37 0.951 9.66 -1.93 1.03 -- -- -- -0.24 11.5 -- -- -- --
295.33 0.8 9.7 -1.68 -- -2.69 -- -- -0.427 -- 0.8288 7731 17.8 2.83
350.36 0.872 9.7 -- 1.08 -2.87 -- -- -0.227 11.2 0.9583 1433 17.9 4.41
479.03 1.02 9.69 -1.96 -- -- -- -- -0.251 -- -- -- -- --
510.59 1.06 9.61 -- 1.05 -- -- -- -0.0249 11.7 -- -- -- --
357.01 0.88 9.75 -- -- -2.79 -- -- -0.335 -- 1.996 9164 17.7 3.18
580.23 1.12 9.64 -- -- -- -- -- -0.034 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.07 radiation 1 1440 < th dose dependent rect. 18 2
5 256.68 radiation 1 1440 < th dose dependent rect. 18 7
6 256.71 radiation 1 1440 < th dose dependent rect. 18 9
12 262.08 humidity 90 43200 > th dose independent rect. 9 1
13 262.65 radiation 10 14400 < th dose dependent rect. 18 11
16 263.51 radiation 1 14400 < th dose dependent rect. 18 4
17 263.52 radiation 1 14400 < th dose dependent rect. 18 2
24 263.62 radiation 1 14400 < th dose dependent rect. 18 9
46 264.30 radiation 30 14400 > th dose independent rect. 16 16
50 264.43 humidity 90 43200 > th dose independent rect. 22 1
53 264.56 humidity 90 43200 < th dose independent rect. 9 2
62 265.01 wind 5 43200 > th dose independent rect. 11 1
63 265.09 radiation 1 43200 > th dose independent rect. 18 1
73 265.11 wind 5 43200 < th dose independent rect. 11 1
78 265.20 humidity 80 43200 > th dose dependent rect. 10 1
84 265.84 radiation 1 14400 < th dose independent rect. 18 11
87 266.06 radiation 1 14400 < th dose independent rect. 18 2
88 266.06 radiation 1 14400 < th dose independent rect. 18 4
93 266.12 radiation 1 14400 < th dose independent rect. 18 9
99 266.27 humidity 90 43200 > th dose dependent rect. 21 2
101 266.39 atmosphere 1005 43200 > th dose independent rect. 16 1
118 266.78 humidity 90 43200 > th dose dependent rect. 18 5
128 267.82 wind 3 43200 > th dose dependent rect. 11 1
131 267.87 humidity 90 43200 > th dose independent rect. 18 5
143 268.41 humidity 90 43200 < th dose independent rect. 22 1
145 268.47 radiation 30 14400 > th dose independent rect. 7 1
162 268.55 humidity 90 43200 < th dose independent rect. 17 6
163 268.55 temperature 20 1440 > th dose dependent rect. 16 1
164 268.61 humidity 90 43200 < th dose independent rect. 20 3
165 268.66 radiation 30 14400 < th dose independent rect. 15 17
169 268.81 atmosphere 1005 43200 < th dose independent rect. 16 1
175 268.94 humidity 90 43200 < th dose independent rect. 20 1
179 268.98 wind 5 43200 < th dose independent rect. 5 10
181 269.08 wind 5 43200 > th dose independent rect. 5 10
203 269.34 humidity 90 43200 > th dose independent rect. 8 16
214 269.53 humidity 90 43200 > th dose independent rect. 3 21
219 269.61 humidity 90 43200 > th dose dependent rect. 8 17
234 269.77 humidity 90 43200 > th dose dependent rect. 4 20
236 269.81 wind 5 43200 < th dose independent rect. 4 12
248 269.90 wind 5 43200 > th dose independent rect. 7 8
327 270.48 atmosphere 1005 43200 > th dose independent rect. 18 1
340 270.56 humidity 90 43200 < th dose independent rect. 8 15
342 270.57 radiation 20 14400 < th dose independent rect. 16 15
344 270.60 temperature 20 1440 > th dose dependent rect. 14 5
354 270.69 temperature 20 1440 > th dose dependent rect. 11 8
370 270.79 temperature 20 1440 > th dose dependent rect. 6 13
371 270.81 temperature 20 43200 > th dose independent rect. 19 1
379 270.87 humidity 90 43200 < th dose independent rect. 18 1
391 270.97 wind 9 43200 < th dose dependent rect. 11 1
408 271.04 humidity 90 43200 < th dose independent rect. 7 18
411 271.04 radiation 1 14400 < th dose dependent rect. 18 14
448 271.30 temperature 20 1440 > th dose dependent sin 22 NA
475 271.41 humidity 90 43200 > th dose dependent sin 18 NA
478 271.42 humidity 90 43200 > th dose independent rect. 4 6
486 271.47 humidity 90 43200 > th dose independent rect. 18 1
510 271.59 radiation 1 14400 < th dose dependent sin 16 NA
514 271.61 humidity 90 43200 < th dose independent rect. 3 20
521 271.62 radiation 1 14400 < th dose dependent rect. 7 22
523 271.64 radiation 1 14400 < th dose dependent rect. 7 16
527 271.66 radiation 1 14400 < th dose dependent rect. 7 13
530 271.67 wind 5 43200 > th dose independent sin 2 NA
541 271.69 radiation 30 14400 > th dose dependent rect. 15 17
543 271.70 wind 5 43200 < th dose independent rect. 24 16
548 271.71 wind 5 43200 < th dose independent sin 3 NA
558 271.75 radiation 1 14400 < th dose dependent rect. 7 20
618 272.01 wind 5 43200 > th dose independent rect. 24 16
673 272.17 radiation 1 14400 < th dose dependent rect. 9 20
680 272.20 wind 3 43200 > th dose dependent rect. 5 9
698 272.26 wind 5 43200 < th dose independent rect. 19 21
721 272.34 temperature 20 43200 < th dose independent rect. 20 1
729 272.36 humidity 90 43200 > th dose independent sin 19 NA
731 272.36 radiation 1 43200 < th dose dependent rect. 4 1
737 272.39 humidity 90 43200 < th dose independent sin 19 NA
741 272.40 wind 5 43200 < th dose independent rect. 20 1
742 272.40 wind 5 43200 > th dose independent rect. 20 21
748 272.41 radiation 1 43200 < th dose dependent rect. 2 3
765 272.46 humidity 90 43200 > th dose independent sin 3 NA
773 272.48 humidity 90 43200 > th dose independent rect. 17 21
778 272.49 humidity 90 43200 > th dose independent rect. 15 23
864 272.68 radiation 1 14400 < th dose independent rect. 5 1
911 272.79 radiation 1 14400 < th dose independent rect. 17 21
924 272.85 radiation 1 14400 > th dose independent rect. 5 1
939 272.90 humidity 90 43200 > th dose independent no NA NA
954 272.93 wind 5 43200 > th dose independent rect. 20 1
957 272.93 radiation 20 14400 > th dose dependent rect. 16 15