Os04g0682100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eukaryotic phosphomannomutase family protein.
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Os04g0682100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eukaryotic phosphomannomutase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.69 | 0.338 | 11.5 | -0.702 | 1.24 | 0.874 | -0.475 | -1.77 | 0.212 | 3.96 | 19.63 | 2910 | -- | -- |
| 53.39 | 0.34 | 11.5 | -0.48 | 1.21 | 1.44 | -0.451 | -- | 0.299 | 3.87 | 18.7 | 3028 | -- | -- |
| 52.22 | 0.337 | 11.5 | -0.68 | 1.23 | 0.904 | -- | -1.74 | 0.222 | 4 | 19.5 | 2803 | -- | -- |
| 54.04 | 0.342 | 11.5 | -0.512 | 1.23 | 1.52 | -- | -- | 0.285 | 3.95 | 18.41 | 3031 | -- | -- |
| 131.87 | 0.535 | 11.5 | -0.696 | -- | 1.05 | -- | -1.63 | 0.218 | -- | 19.63 | 2608 | -- | -- |
| 82.41 | 0.426 | 11.4 | 0.186 | 1.27 | -- | -0.64 | -- | 0.549 | 3.98 | -- | -- | -- | -- |
| 83.59 | 0.428 | 11.4 | 0.194 | 1.27 | -- | -- | -- | 0.552 | 3.98 | -- | -- | -- | -- |
| 131.39 | 0.534 | 11.5 | -0.52 | -- | 1.72 | -- | -- | 0.22 | -- | 18.6 | 2654 | -- | -- |
| 58.85 | 0.357 | 11.5 | -- | 1.22 | 1.31 | -- | -- | 0.38 | 3.92 | 18.09 | 2995 | -- | -- |
| 171.12 | 0.611 | 11.4 | 0.246 | -- | -- | -- | -- | 0.586 | -- | -- | -- | -- | -- |
| 84.59 | 0.43 | 11.4 | -- | 1.27 | -- | -- | -- | 0.531 | 3.98 | -- | -- | -- | -- |
| 135.8 | 0.543 | 11.5 | -- | -- | 1.58 | -- | -- | 0.391 | -- | 18 | 2636 | -- | -- |
| 172.72 | 0.613 | 11.4 | -- | -- | -- | -- | -- | 0.559 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 49.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 3 | 50.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 5 | 50.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 12 | 50.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 25 | 51.14 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 41 | 51.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 59 | 52.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 73 | 52.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 74 | 52.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 75 | 52.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 79 | 52.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 84 | 52.47 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 88 | 52.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 109 | 52.59 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 114 | 52.59 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 125 | 52.66 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 127 | 52.66 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 159 | 52.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 175 | 52.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 179 | 52.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 183 | 52.90 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 184 | 52.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 200 | 52.94 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 221 | 52.99 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 235 | 53.04 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 249 | 53.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 257 | 53.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 261 | 53.12 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 284 | 53.17 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 286 | 53.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 331 | 53.25 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 339 | 53.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 423 | 53.43 | humidity | 70 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 438 | 53.46 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 439 | 53.46 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 479 | 53.52 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 486 | 53.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 501 | 53.55 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 509 | 53.56 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 523 | 53.57 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 565 | 53.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 575 | 53.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 582 | 53.65 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 598 | 53.68 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 607 | 53.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 10 |
| 622 | 53.71 | humidity | 50 | 43200 | > th | dose independent | sin | 10 | NA |
| 647 | 53.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 678 | 53.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 727 | 53.82 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 802 | 53.90 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 824 | 53.91 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 844 | 53.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 918 | 54.01 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 990 | 54.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |