Os02g0640000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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Os02g0640000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.17 | 0.552 | 5.37 | -1.31 | 0.137 | -6.27 | -0.731 | -10.1 | -0.196 | 14.9 | 19.6 | 5478 | -- | -- |
| 185.84 | 0.64 | 5.53 | -0.492 | 0.0181 | -1.32 | -0.604 | -- | 0.0559 | 15.3 | 19.6 | 5478 | -- | -- |
| 139.93 | 0.551 | 5.37 | -1.32 | 0.136 | -6.28 | -- | -10.1 | -0.196 | 14.5 | 19.54 | 5451 | -- | -- |
| 148.49 | 0.568 | 5.59 | -0.85 | 0.103 | -1.69 | -- | -- | -0.189 | 14 | 33.99 | 1545 | -- | -- |
| 140.75 | 0.553 | 5.34 | -1.37 | -- | -7.21 | -- | -12.1 | -0.188 | -- | 19.2 | 5475 | -- | -- |
| 195.12 | 0.655 | 5.52 | -0.297 | 0.075 | -- | -0.683 | -- | 0.126 | 14.6 | -- | -- | -- | -- |
| 196.77 | 0.657 | 5.52 | -0.314 | 0.0734 | -- | -- | -- | 0.122 | 14.8 | -- | -- | -- | -- |
| 149.03 | 0.569 | 5.59 | -0.86 | -- | -1.7 | -- | -- | -0.192 | -- | 55.27 | 1621 | -- | -- |
| 165.03 | 0.598 | 5.56 | -- | 0.131 | -1.32 | -- | -- | -0.0477 | 14.9 | 55.74 | 1499 | -- | -- |
| 197.09 | 0.656 | 5.52 | -0.318 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 199.38 | 0.661 | 5.51 | -- | 0.0795 | -- | -- | -- | 0.157 | 14.8 | -- | -- | -- | -- |
| 165.81 | 0.6 | 5.56 | -- | -- | -1.32 | -- | -- | -0.0415 | -- | 60.51 | 1594 | -- | -- |
| 199.75 | 0.66 | 5.51 | -- | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 2 | 137.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 3 | 137.80 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 4 | 137.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 5 | 138.38 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 6 | 138.42 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 7 | 138.42 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 8 | 138.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 16 | 139.09 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 17 | 139.13 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 2 |
| 22 | 139.26 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 35 | 139.51 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 51 | 139.88 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 52 | 139.89 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 56 | 139.91 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 60 | 139.91 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 66 | 139.93 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 7 | 20 |
| 69 | 139.94 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 5 | 20 |
| 74 | 139.94 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 9 | 21 |
| 130 | 140.00 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 132 | 140.00 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 138 | 140.01 | atmosphere | 1015.0 | 14400 | < th | dose independent | no | NA | NA |
| 139 | 140.01 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 143 | 140.02 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 149 | 140.03 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 152 | 140.03 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 13 | 17 |
| 154 | 140.03 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 155 | 140.03 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 156 | 140.04 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 162 | 140.04 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 4 | 20 |
| 183 | 140.04 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 262 | 140.11 | atmosphere | 1015.0 | 14400 | > th | dose independent | no | NA | NA |
| 266 | 140.11 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 280 | 140.13 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 285 | 140.14 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 307 | 140.17 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 367 | 140.25 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 368 | 140.25 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 371 | 140.26 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 372 | 140.26 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 379 | 140.27 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 380 | 140.27 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 402 | 140.29 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 423 | 140.32 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 437 | 140.34 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 442 | 140.34 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 443 | 140.34 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 448 | 140.35 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 8 | 4 |
| 452 | 140.36 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 1 | NA |
| 457 | 140.36 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 22 | 7 |
| 474 | 140.38 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 487 | 140.39 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 500 | 140.40 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 502 | 140.40 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 510 | 140.41 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 2 | 16 |
| 513 | 140.41 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 21 | 9 |
| 514 | 140.41 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 20 | 11 |
| 517 | 140.42 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 519 | 140.42 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 542 | 140.43 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 696 | 140.58 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 727 | 140.61 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 3 |
| 728 | 140.62 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 764 | 140.64 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 801 | 140.68 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 844 | 140.73 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 967 | 140.93 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 984 | 140.96 | atmosphere | 1015.0 | 14400 | > th | dose dependent | no | NA | NA |
| 987 | 140.96 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 2 | 23 |