BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0640000 Os02g0640000|AK120841
         (143 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0640000  C2 calcium/lipid-binding region, CaLB domain c...   298   1e-81
Os04g0531100  C2 calcium/lipid-binding region, CaLB domain c...   244   2e-65
Os04g0682100  Eukaryotic phosphomannomutase family protein        187   3e-48
Os01g0841700  RPP17-1                                             108   1e-24

>Os02g0640000 C2 calcium/lipid-binding region, CaLB domain containing protein
          Length = 143

 Score =  298 bits (762), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MVHGTLEVLLVGAKGLENTDYLCNMDPYAILKCRSQEQRSSIASGKGSNPEWNENFVFTV 60
           MVHGTLEVLLVGAKGLENTDYLCNMDPYAILKCRSQEQRSSIASGKGSNPEWNENFVFTV
Sbjct: 1   MVHGTLEVLLVGAKGLENTDYLCNMDPYAILKCRSQEQRSSIASGKGSNPEWNENFVFTV 60

Query: 61  SDKATELLIKLLDSDTGSADDFVGEATIPLEAVYTEGSIPPTLYNVVKDEHYCGEIKVGL 120
           SDKATELLIKLLDSDTGSADDFVGEATIPLEAVYTEGSIPPTLYNVVKDEHYCGEIKVGL
Sbjct: 61  SDKATELLIKLLDSDTGSADDFVGEATIPLEAVYTEGSIPPTLYNVVKDEHYCGEIKVGL 120

Query: 121 TFTPEDVRQRGLPEDFGGWKQSR 143
           TFTPEDVRQRGLPEDFGGWKQSR
Sbjct: 121 TFTPEDVRQRGLPEDFGGWKQSR 143



>Os04g0531100 C2 calcium/lipid-binding region, CaLB domain containing protein
          Length = 144

 Score =  244 bits (622), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/143 (81%), Positives = 130/143 (90%), Gaps = 1/143 (0%)

Query: 1   MVHGTLEVLLVGAKGLENTDYLCNMDPYAILKCRSQEQRSSIASGKGSNPEWNENFVFTV 60
           MV GTLEVLLVGAKGLENTDYLCNMDPYA+LKCRSQEQ+SS+ASGKGS+PEWNE F+F+V
Sbjct: 1   MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 60

Query: 61  SDKATELLIKLLDSDTGSADDFVGEATIPLEAVYTEGSIPPTLYNVVKDEHYCGEIKVGL 120
           +  ATEL+IKL+DSD+G+ DDFVGEATI LEA+YTEGSIPPT+YNVVK+E Y GEIKVGL
Sbjct: 61  THNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGSIPPTVYNVVKEEEYRGEIKVGL 120

Query: 121 TFTPEDVRQRGLP-EDFGGWKQS 142
           TFTPED R RGL  ED GGWKQS
Sbjct: 121 TFTPEDDRDRGLSEEDIGGWKQS 143



>Os04g0682100 Eukaryotic phosphomannomutase family protein
          Length = 145

 Score =  187 bits (474), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 102/124 (82%)

Query: 1   MVHGTLEVLLVGAKGLENTDYLCNMDPYAILKCRSQEQRSSIASGKGSNPEWNENFVFTV 60
           MVHG LEVLLV AKGLE+TD+L +MDPY IL CR+QEQ+SS+A G GS PEWNE FVFTV
Sbjct: 1   MVHGKLEVLLVCAKGLEDTDFLNDMDPYVILTCRTQEQKSSVAKGAGSEPEWNETFVFTV 60

Query: 61  SDKATELLIKLLDSDTGSADDFVGEATIPLEAVYTEGSIPPTLYNVVKDEHYCGEIKVGL 120
           SD   +L +K++DSD  SADDFVGEA IPLE V+ EGS+PP ++ VVK+E YCGEIKV L
Sbjct: 61  SDDVPQLNVKIMDSDAFSADDFVGEANIPLEPVFLEGSLPPAVHRVVKEEKYCGEIKVAL 120

Query: 121 TFTP 124
           TFTP
Sbjct: 121 TFTP 124



>Os01g0841700 RPP17-1
          Length = 159

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 89/153 (58%), Gaps = 15/153 (9%)

Query: 4   GTLEVLLVGAKGLENTDYLC---NMDPYAILKCRSQEQRSSIASGKGSNPEWNENFVFTV 60
           G LEV LV AKGL   D+L     +DPY +++ RSQE++SS+A  +G NP WNE F F +
Sbjct: 5   GVLEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQI 64

Query: 61  SDKAT----ELLIKLLDSDTGSADDFVGEATIPLEAVYTEG------SIPPTLYNVV-KD 109
           +  A     +L ++L+D DT S DDF+GEATI +  + + G       +  + + VV  D
Sbjct: 65  NSTAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEMSESKHRVVLAD 124

Query: 110 EHYCGEIKVGLTFTPEDVRQRGLPEDFGGWKQS 142
           + Y GEI+V LTFT    + +   E  GGW  S
Sbjct: 125 KTYHGEIRVSLTFTAS-AKAQDHAEQVGGWAHS 156



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,332,447
Number of extensions: 216702
Number of successful extensions: 495
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 4
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)