BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0679100 Os04g0679100|AK103034
         (301 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0679100  Clathrin light chain family protein                 293   1e-79
Os06g0731800  Clathrin light chain family protein                 161   6e-40
Os07g0461500  Clathrin light chain family protein                 141   7e-34

>Os04g0679100 Clathrin light chain family protein
          Length = 301

 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/301 (55%), Positives = 168/301 (55%)

Query: 1   MASFFADDGADELPRTASHPFXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXX 60
           MASFFADDGADELPRTASHPF                          F            
Sbjct: 1   MASFFADDGADELPRTASHPFDADDDAAPDASGGAAADDTGYGGYASFVDGGVEDVEEEE 60

Query: 61  XXXXXXXXXXPIGHVXXXXXXXXXXXXXXXXXXXXXXXXXXAQMGAEEGILLREWRRQNA 120
                     PIGHV                          AQMGAEEGILLREWRRQNA
Sbjct: 61  EEIAVESEGVPIGHVSGGFSPSPFSPDPELDGGDGPILPPPAQMGAEEGILLREWRRQNA 120

Query: 121 IVXXXXXXXXXXXXAQILXXXXXXXXXXXXXRIQNCETNKVHNREREKIFVAGQEKFHAE 180
           IV            AQIL             RIQNCETNKVHNREREKIFVAGQEKFHAE
Sbjct: 121 IVLEEKERKEKELRAQILAEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEKFHAE 180

Query: 181 ADKQYWKSISELIPHEIATIEKRGXXXXXXXPSITVIQGPKPGKPTDLSRMRQILVKLKX 240
           ADKQYWKSISELIPHEIATIEKRG       PSITVIQGPKPGKPTDLSRMRQILVKLK 
Sbjct: 181 ADKQYWKSISELIPHEIATIEKRGKKDKDKKPSITVIQGPKPGKPTDLSRMRQILVKLKH 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXTPAPANGTKKPAESKEKPANGSPAEAEKEQPAAS 300
                                     TPAPANGTKKPAESKEKPANGSPAEAEKEQPAAS
Sbjct: 241 APPPHMMQPPPASAAKDGAKDGAKDGTPAPANGTKKPAESKEKPANGSPAEAEKEQPAAS 300

Query: 301 E 301
           E
Sbjct: 301 E 301



>Os06g0731800 Clathrin light chain family protein
          Length = 291

 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 93/140 (66%), Gaps = 3/140 (2%)

Query: 103 QMGAEEGILLREWRRQNAIVXXXXXXXXXXXXAQILXXXXXXXXXXXXXRIQNCETNKVH 162
           QMGA+EG LLREWRRQNAI+             QI+             R  N ET+K  
Sbjct: 85  QMGADEGFLLREWRRQNAILLEEKEKKEKEMRNQIILDAKEFKKAFVEKRKLNVETSKDQ 144

Query: 163 NREREKIFVAGQEKFHAEADKQYWKSISELIPHEIATIEKRGX---XXXXXXPSITVIQG 219
           NREREK+++A QEKFHA ADKQYWK+ISELIPHEIA IEKRG          P I VIQG
Sbjct: 145 NREREKLYLANQEKFHAGADKQYWKAISELIPHEIANIEKRGAKKDKDKEKKPGIVVIQG 204

Query: 220 PKPGKPTDLSRMRQILVKLK 239
           PKPGKPTD+SRMRQIL+KLK
Sbjct: 205 PKPGKPTDMSRMRQILLKLK 224



>Os07g0461500 Clathrin light chain family protein
          Length = 363

 Score =  141 bits (355), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 9/142 (6%)

Query: 107 EEGILLREWRRQNAIVXXXXXXXXXXXXAQILXXXXXXXXXXXXXRIQNCETNKVHNRER 166
           EEGIL REWRRQNA++             +I+             R  N +TN+  NR+R
Sbjct: 147 EEGILRREWRRQNALMLEEKERKERERRGEIIAEADEFKRSFAEKRKLNGDTNRAQNRDR 206

Query: 167 EKIFVAGQEKFHAEADKQYWKSISELIPHEIATIEKRG---------XXXXXXXPSITVI 217
           EK+F+A QEKFH EA+KQYWK+I+E++PHEI  +EKRG                P + V+
Sbjct: 207 EKLFLAKQEKFHGEAEKQYWKAIAEMVPHEIPGLEKRGKRREKQSAEANAKAKQPGVVVV 266

Query: 218 QGPKPGKPTDLSRMRQILVKLK 239
           QG KPGKPTDLSRMRQ+L+KLK
Sbjct: 267 QGTKPGKPTDLSRMRQVLMKLK 288



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,844,481
Number of extensions: 139837
Number of successful extensions: 533
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 3
Length of query: 301
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 201
Effective length of database: 11,814,401
Effective search space: 2374694601
Effective search space used: 2374694601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)