Os06g0731800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Clathrin light chain family protein.
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Os06g0731800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Clathrin light chain family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.93 | 0.274 | 14.9 | 0.728 | 0.825 | -1.03 | 0.664 | 0.633 | 0.44 | 20.6 | 24.1 | 2742 | -- | -- |
| 34.32 | 0.273 | 14.9 | 0.829 | 0.827 | -1.15 | 0.649 | -- | 0.48 | 20.6 | 23.23 | 2779 | -- | -- |
| 35.35 | 0.277 | 15 | 0.701 | 0.824 | -1.04 | -- | 0.642 | 0.437 | 20.6 | 24.14 | 2790 | -- | -- |
| 35.73 | 0.278 | 14.9 | 0.803 | 0.83 | -1.18 | -- | -- | 0.477 | 20.7 | 23.13 | 2795 | -- | -- |
| 55.04 | 0.346 | 14.9 | 0.674 | -- | -1.63 | -- | 1.39 | 0.442 | -- | 120.9 | 677 | -- | -- |
| 55.02 | 0.348 | 14.9 | 1.33 | 0.827 | -- | 0.679 | -- | 0.745 | 20.9 | -- | -- | -- | -- |
| 56.58 | 0.352 | 14.9 | 1.31 | 0.825 | -- | -- | -- | 0.744 | 20.9 | -- | -- | -- | -- |
| 55.75 | 0.348 | 14.9 | 0.906 | -- | -1.57 | -- | -- | 0.47 | -- | 31.3 | 674 | -- | -- |
| 40.48 | 0.296 | 15 | -- | 0.814 | -1.37 | -- | -- | 0.348 | 20.8 | 19.76 | 28719 | -- | -- |
| 95.45 | 0.457 | 14.8 | 1.31 | -- | -- | -- | -- | 0.739 | -- | -- | -- | -- | -- |
| 101.63 | 0.472 | 14.9 | -- | 0.823 | -- | -- | -- | 0.599 | 21 | -- | -- | -- | -- |
| 74.83 | 0.403 | 14.9 | -- | -- | -1.89 | -- | -- | 0.291 | -- | 30.21 | 710 | -- | -- |
| 140.56 | 0.553 | 14.9 | -- | -- | -- | -- | -- | 0.594 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 3 | 34.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 15 | 34.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 36 | 34.77 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 65 | 34.90 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 80 | 34.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 120 | 35.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 125 | 35.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 141 | 35.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 165 | 35.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 185 | 35.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 207 | 35.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 234 | 35.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 280 | 35.34 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 315 | 35.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 327 | 35.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 341 | 35.39 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 520 | 35.54 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 602 | 35.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 605 | 35.59 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 606 | 35.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 617 | 35.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 629 | 35.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 660 | 35.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 682 | 35.64 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 722 | 35.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 841 | 35.74 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 919 | 35.78 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 947 | 35.81 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 966 | 35.82 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |