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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0461500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Clathrin light chain family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0493) R2 : 0.112
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.26 (0.169) R2dE : 0.121 R2E : 0.0656
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.44 (0.109) R2dN8 : 0.0466 R2N8 : -0.00917
σ : 0.914
deviance : 384.87
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.02651
memory length : 11587
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
374.82 0.91 3.4 -0.00233 0.188 -1.25 1.35 -0.157 0.437 11.8 0.2293 11480 -- --
374.74 0.902 3.4 0.0167 0.188 -1.25 1.34 -- 0.444 11.7 0.3311 11587 -- --
382.62 0.911 3.4 0.0509 0.167 -1.23 -- -0.105 0.433 12.1 0.2916 11582 -- --
382.55 0.911 3.4 0.075 0.184 -1.25 -- -- 0.446 12.8 0.1481 11587 -- --
384.73 0.914 3.4 0.0553 -- -1.26 -- -0.136 0.443 -- 0.4557 11587 -- --
420.8 0.962 3.46 -0.0228 0.2 -- 1.38 -- 0.164 11.6 -- -- -- --
428.79 0.97 3.46 0.0348 0.202 -- -- -- 0.171 12.8 -- -- -- --
384.75 0.914 3.4 0.0668 -- -1.26 -- -- 0.448 -- 0.4312 11587 -- --
382.69 0.911 3.4 -- 0.186 -1.25 -- -- 0.444 12.7 0.001938 11587 -- --
431.34 0.97 3.46 0.0274 -- -- -- -- 0.167 -- -- -- -- --
428.83 0.969 3.46 -- 0.201 -- -- -- 0.167 12.8 -- -- -- --
384.87 0.914 3.4 -- -- -1.26 -- -- 0.44 -- 0.02651 11587 -- --
431.36 0.969 3.46 -- -- -- -- -- 0.164 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 364.43 humidity 90.0 14400 > th dose independent rect. 13 1
3 365.26 precipitation 0.1 14400 > th dose dependent rect. 18 1
4 365.72 precipitation 0.1 14400 < th dose independent rect. 18 1
5 365.72 precipitation 0.1 14400 < th dose dependent rect. 18 1
6 365.83 precipitation 0.1 14400 > th dose independent rect. 18 1
7 367.07 precipitation 0.1 14400 < th dose independent rect. 14 2
8 367.07 precipitation 0.1 14400 < th dose dependent rect. 14 2
9 367.30 precipitation 0.1 14400 > th dose independent rect. 14 2
10 367.30 precipitation 0.1 14400 > th dose dependent rect. 14 2
11 368.09 precipitation 0.1 14400 > th dose independent rect. 5 11
12 368.14 precipitation 0.1 14400 < th dose independent rect. 5 11
13 368.14 precipitation 0.1 14400 < th dose dependent rect. 5 11
16 368.32 precipitation 0.1 14400 > th dose independent rect. 7 9
18 368.42 precipitation 0.1 14400 < th dose independent rect. 7 9
19 368.42 precipitation 0.1 14400 < th dose dependent rect. 7 9
26 369.08 wind 1.0 14400 > th dose independent rect. 18 2
28 369.38 precipitation 0.1 14400 < th dose independent rect. 9 7
29 369.38 precipitation 0.1 14400 < th dose dependent rect. 9 7
39 369.87 precipitation 0.1 14400 > th dose independent rect. 9 7
45 370.17 precipitation 0.1 14400 > th dose dependent rect. 5 11
51 370.59 humidity 90.0 14400 > th dose dependent rect. 13 1
57 371.10 humidity 90.0 14400 < th dose independent rect. 12 2
108 372.62 precipitation 0.1 14400 > th dose dependent rect. 16 1
112 372.75 precipitation 0.1 14400 > th dose independent rect. 16 1
121 372.95 precipitation 0.1 14400 > th dose independent rect. 5 5
122 372.95 precipitation 0.1 14400 > th dose dependent rect. 5 5
123 372.97 precipitation 0.1 14400 < th dose independent rect. 16 1
124 372.97 precipitation 0.1 14400 < th dose dependent rect. 16 1
125 372.99 precipitation 0.1 14400 > th dose dependent rect. 10 7
144 373.72 precipitation 0.1 14400 < th dose independent sin 2 NA
145 373.72 precipitation 0.1 14400 < th dose dependent sin 2 NA
146 373.74 precipitation 0.1 14400 > th dose independent sin 2 NA
150 373.86 precipitation 0.1 14400 < th dose independent rect. 5 5
151 373.86 precipitation 0.1 14400 < th dose dependent rect. 5 5
158 374.14 wind 1.0 14400 < th dose independent rect. 18 2
168 374.39 humidity 90.0 14400 > th dose dependent rect. 12 5
175 374.47 precipitation 0.1 14400 > th dose independent rect. 11 9
179 374.55 precipitation 0.1 14400 < th dose independent rect. 10 10
180 374.55 precipitation 0.1 14400 < th dose dependent rect. 10 10
196 375.00 temperature 20.0 14400 > th dose independent rect. 17 2
215 375.47 temperature 20.0 14400 < th dose independent rect. 16 4
218 375.60 precipitation 0.1 14400 > th dose independent rect. 24 20
219 375.61 precipitation 0.1 14400 > th dose independent rect. 14 6
220 375.63 precipitation 0.1 14400 > th dose dependent rect. 18 11
222 375.66 precipitation 0.1 14400 < th dose independent rect. 24 20
223 375.66 precipitation 0.1 14400 < th dose dependent rect. 24 20
224 375.69 precipitation 0.1 14400 > th dose independent rect. 7 3
225 375.69 precipitation 0.1 14400 > th dose dependent rect. 7 3
226 375.72 precipitation 0.1 14400 < th dose independent rect. 14 6
227 375.72 precipitation 0.1 14400 < th dose dependent rect. 14 6
229 375.77 precipitation 0.1 14400 > th dose independent rect. 11 18
232 375.79 precipitation 0.1 14400 < th dose independent rect. 11 18
233 375.79 precipitation 0.1 14400 < th dose dependent rect. 11 18
234 375.80 precipitation 0.1 14400 < th dose independent rect. 21 23
235 375.80 precipitation 0.1 14400 < th dose dependent rect. 21 23
239 375.84 precipitation 0.1 14400 > th dose independent rect. 21 23
249 375.94 precipitation 0.1 14400 > th dose independent rect. 14 15
252 375.97 precipitation 0.1 14400 < th dose independent rect. 14 15
253 375.97 precipitation 0.1 14400 < th dose dependent rect. 14 15
282 376.24 precipitation 0.1 14400 < th dose independent rect. 7 1
283 376.24 precipitation 0.1 14400 < th dose dependent rect. 7 1
284 376.25 humidity 90.0 14400 > th dose dependent rect. 9 8
286 376.27 precipitation 0.1 14400 < th dose independent rect. 24 17
288 376.27 precipitation 0.1 14400 < th dose dependent rect. 24 17
292 376.29 precipitation 0.1 14400 > th dose independent rect. 7 1
294 376.29 precipitation 0.1 14400 > th dose independent rect. 24 17
295 376.29 precipitation 0.1 14400 > th dose dependent rect. 7 1
351 376.70 precipitation 0.1 14400 > th dose dependent rect. 18 23
381 376.87 precipitation 0.1 14400 < th dose independent rect. 3 17
383 376.87 precipitation 0.1 14400 < th dose dependent rect. 3 17
422 377.20 precipitation 0.1 14400 < th dose independent rect. 7 3
424 377.20 precipitation 0.1 14400 < th dose dependent rect. 7 3
428 377.22 precipitation 0.1 14400 < th dose independent rect. 5 3
429 377.22 precipitation 0.1 14400 < th dose dependent rect. 5 3
430 377.22 precipitation 0.1 14400 > th dose dependent rect. 24 17
431 377.25 precipitation 0.1 14400 > th dose independent rect. 16 4
435 377.34 precipitation 0.1 14400 < th dose independent rect. 18 23
436 377.34 precipitation 0.1 14400 < th dose dependent rect. 18 23
441 377.37 precipitation 0.1 14400 > th dose independent rect. 18 23
443 377.39 precipitation 0.1 14400 < th dose independent rect. 16 4
444 377.39 temperature 20.0 14400 > th dose independent rect. 15 5
445 377.39 precipitation 0.1 14400 < th dose dependent rect. 16 4
516 377.86 precipitation 0.1 14400 < th dose independent rect. 9 1
517 377.86 precipitation 0.1 14400 < th dose dependent rect. 9 1
519 377.87 precipitation 0.1 14400 > th dose independent rect. 9 1
520 377.87 precipitation 0.1 14400 > th dose dependent sin 3 NA
521 377.87 precipitation 0.1 14400 > th dose dependent rect. 9 1
558 378.21 precipitation 0.1 14400 < th dose independent rect. 18 11
560 378.21 precipitation 0.1 14400 < th dose dependent rect. 18 11
565 378.23 precipitation 0.1 14400 > th dose independent rect. 18 11
592 378.32 precipitation 0.1 14400 > th dose dependent rect. 21 20
597 378.35 precipitation 0.1 14400 < th dose independent rect. 14 23
599 378.35 precipitation 0.1 14400 < th dose dependent rect. 14 23
600 378.36 precipitation 0.1 14400 > th dose independent sin 15 NA
605 378.38 precipitation 0.1 14400 < th dose independent sin 15 NA
608 378.38 precipitation 0.1 14400 > th dose independent rect. 14 23
609 378.38 precipitation 0.1 14400 < th dose dependent sin 15 NA
649 378.57 precipitation 0.1 14400 > th dose independent no NA NA
650 378.57 precipitation 0.1 14400 < th dose independent no NA NA
653 378.57 precipitation 0.1 14400 < th dose dependent no NA NA
670 378.63 precipitation 0.1 14400 > th dose dependent rect. 21 23
675 378.65 precipitation 0.1 14400 < th dose independent rect. 3 23
678 378.65 precipitation 0.1 14400 < th dose dependent rect. 3 23
680 378.66 precipitation 0.1 14400 > th dose independent rect. 3 23
697 378.82 precipitation 0.1 14400 < th dose independent rect. 16 23
699 378.82 precipitation 0.1 14400 < th dose dependent rect. 16 23
702 378.84 precipitation 0.1 14400 > th dose independent rect. 16 23
736 378.98 precipitation 0.1 14400 > th dose dependent rect. 18 19
782 379.13 precipitation 0.1 14400 > th dose dependent rect. 11 18
861 379.38 temperature 20.0 14400 > th dose independent rect. 8 13
893 379.49 humidity 80.0 43200 < th dose dependent rect. 6 1
901 379.53 precipitation 0.1 14400 > th dose dependent rect. 18 4
956 379.71 humidity 90.0 14400 > th dose dependent rect. 15 1