BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0675700 Os04g0675700|Os04g0675700
(128 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0675700 Hypothetical protein 265 5e-72
Os07g0161500 102 6e-23
Os07g0163200 96 1e-20
Os07g0158900 Cyclin-like F-box domain containing protein 93 5e-20
Os04g0651601 84 2e-17
Os07g0160500 Conserved hypothetical protein 71 2e-13
>Os04g0675700 Hypothetical protein
Length = 128
Score = 265 bits (678), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MLNCRHQPYREEDGELRIVGPPHQHAHLKRVRISGFFGHKDQVELALHILRSSMTLEQMV 60
MLNCRHQPYREEDGELRIVGPPHQHAHLKRVRISGFFGHKDQVELALHILRSSMTLEQMV
Sbjct: 1 MLNCRHQPYREEDGELRIVGPPHQHAHLKRVRISGFFGHKDQVELALHILRSSMTLEQMV 60
Query: 61 ITPKLEIGNDLAFSDPCADEYEKKHYVDGHRVATEFVCKTDHRNVVTVERVVPEPADGEV 120
ITPKLEIGNDLAFSDPCADEYEKKHYVDGHRVATEFVCKTDHRNVVTVERVVPEPADGEV
Sbjct: 61 ITPKLEIGNDLAFSDPCADEYEKKHYVDGHRVATEFVCKTDHRNVVTVERVVPEPADGEV 120
Query: 121 ERKRRRAN 128
ERKRRRAN
Sbjct: 121 ERKRRRAN 128
>Os07g0161500
Length = 481
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 70/103 (67%), Gaps = 4/103 (3%)
Query: 6 HQPYREEDGELRIVGPPHQHAHLKRVRISGFFGHKDQVELALHILRSSMTLEQMVITPKL 65
H+PY EEDG+LR + P H H +LK+V+I+G FG KDQVELALHIL SS L+ MVI P++
Sbjct: 382 HKPYSEEDGDLRSL-PLHHHNNLKQVQITGIFGQKDQVELALHILCSSTVLKNMVINPEI 440
Query: 66 EIGNDLAFSDPCADEYEKKHYVDGHRVATEFVCKTDHRNVVTV 108
I A+ P + ++VDG A EFVCK DHRNVV V
Sbjct: 441 AIVPHDAYRPP---KRGAHNFVDGRDAAMEFVCKADHRNVVEV 480
>Os07g0163200
Length = 515
Score = 95.5 bits (236), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/112 (48%), Positives = 72/112 (64%), Gaps = 8/112 (7%)
Query: 2 LNCR-HQPYREEDGELRIVGPPHQHAHLKRVRISGFFGHKDQVELALHILRSSMTLEQMV 60
+NCR H YR+ G+LR + PP H HLK V I+GF+G KDQ+ELA HILR+S+ L+ M
Sbjct: 378 MNCRDHLRYRKAHGKLRTL-PPCPHYHLKEVNIAGFYGQKDQLELAHHILRNSVVLQAMN 436
Query: 61 ITPKLEIGNDLAFSDPCADE-YEKKHYVDGHRVATEFVCKTDHRNVVTVERV 111
I P+ +A DP E ++VDG +VA +++CK DHRNVV V V
Sbjct: 437 IDPR-----PIAACDPSRMAILEAFNFVDGSKVAMKYLCKADHRNVVHVSDV 483
>Os07g0158900 Cyclin-like F-box domain containing protein
Length = 496
Score = 92.8 bits (229), Expect = 5e-20, Method: Composition-based stats.
Identities = 54/116 (46%), Positives = 69/116 (59%), Gaps = 11/116 (9%)
Query: 6 HQPYREE-DGELRIVGPPHQHAHLKRVRISGFFGHKDQVELALHILRSSMTLEQMVITPK 64
HQ YREE GELR + PP HAHL+ V ISGF G KDQ+EL+LHILR+S + M + PK
Sbjct: 365 HQRYREEAHGELRSL-PPQPHAHLRLVHISGFIGMKDQLELSLHILRNSAMIRAMKVDPK 423
Query: 65 LEIGNDLAFSDPCA---DEYEKKHYVDGHRVATEFVCKTDHRNVVTVERVVPEPAD 117
F+ PC E Y+DG+ VA E++C+ DH NVV V + E +
Sbjct: 424 ------PLFALPCISMLSPLEGFQYLDGYEVAIEYLCREDHNNVVDVSEIRREEVE 473
>Os04g0651601
Length = 310
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 7/105 (6%)
Query: 4 CRHQPYREEDGELRIVGPPHQHAHLKRVRISGFFGHKDQVELALHILRSSMTLEQMVITP 63
C HQ Y ++DGELR + P H+HL V+I+GFFG KDQ+ELALHILR++ L+ MVI
Sbjct: 207 CVHQRYCQDDGELRSL-PRCPHSHLSWVQITGFFGEKDQLELALHILRNATFLKAMVIET 265
Query: 64 KLEIGNDLAFSDPCADEYEKKHYVDGHRVATEFVCKTDHRNVVTV 108
L ++ S C Y ++ DG+ VA EF+ K DH N V V
Sbjct: 266 SLNTESE---SVNC---YPERLSPDGYSVALEFLGKEDHNNAVHV 304
>Os07g0160500 Conserved hypothetical protein
Length = 137
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 6 HQPYREEDGELRIVGPPHQHAHLKRVRISGFFGHKDQVELALHILRSSMTLEQMVITPKL 65
+Q Y E+ G LR + P H H++LK ++GF+G KDQ+EL HIL +S+ L M I P+
Sbjct: 7 NQHYCEDHGVLRSL-PNHAHSNLKLAYVTGFYGMKDQLELLRHILINSVMLNAMKIDPRP 65
Query: 66 EIGNDLAFSDPCADEYEKKHYVDGHRVATEFVCKTDHRNVVTVERVVPE 114
+ C E + ++G+RVA E++ K DHRNV+ V ++ E
Sbjct: 66 VVAVPHGTVMLCT---EGLNCLNGYRVAMEYLSKADHRNVLDVHEILLE 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,939,564
Number of extensions: 182273
Number of successful extensions: 437
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 6
Length of query: 128
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 39
Effective length of database: 12,388,755
Effective search space: 483161445
Effective search space used: 483161445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)