FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0675700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0316) R2 : 0.00499
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.101 (0.0666) R2dN8 : 0.00645 R2N8 : 0.00499
σ : 0.596
deviance : 162.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.81 0.577 3.03 -0.146 0.128 -0.78 -0.0568 1.03 0.0934 8.92 0.899 9 -- --
151.74 0.574 3.03 -0.145 0.127 -0.694 -0.0383 -- 0.0966 8.72 0.8957 8 -- --
150.82 0.572 3.03 -0.148 0.128 -0.781 -- 1.03 0.0933 8.92 0.8982 8 -- --
151.73 0.574 3.02 -0.125 0.139 -0.686 -- -- 0.0983 8.65 0.8628 8 -- --
151.76 0.574 3.03 -0.15 -- -0.8 -- 1.1 0.0948 -- 0.8987 8 -- --
160.02 0.593 3.02 -0.0706 0.231 -- -0.0999 -- 0.0883 6.41 -- -- -- --
160.05 0.592 3.02 -0.0719 0.231 -- -- -- 0.0886 6.39 -- -- -- --
152.81 0.576 3.03 -0.127 -- -0.71 -- -- 0.1 -- 0.8357 8 -- --
152.14 0.574 3.02 -- 0.14 -0.673 -- -- 0.112 8.66 0.8407 8 -- --
162.81 0.596 3.03 -0.0659 -- -- -- -- 0.0935 -- -- -- -- --
160.18 0.592 3.02 -- 0.23 -- -- -- 0.0966 6.4 -- -- -- --
153.23 0.577 3.02 -- -- -0.695 -- -- 0.114 -- 0.8728 8 -- --
162.92 0.596 3.03 -- -- -- -- -- 0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 143.36 temperature 20.0 30 > th dose independent rect. 2 1
2 143.46 humidity 80.0 30 > th dose independent rect. 2 1
4 143.57 humidity 80.0 30 > th dose dependent rect. 2 1
5 143.65 temperature 20.0 30 > th dose dependent rect. 2 1
8 143.81 wind 3.0 30 < th dose dependent rect. 2 1
9 143.85 wind 1.0 30 < th dose independent rect. 2 1
15 143.99 atmosphere 1005.0 30 > th dose dependent rect. 2 1
17 144.01 temperature 25.0 30 < th dose independent rect. 2 1
18 144.03 atmosphere 1000.0 30 > th dose independent rect. 2 1
19 144.04 atmosphere 995.0 30 > th dose dependent rect. 2 1
21 144.08 wind 5.0 30 < th dose independent rect. 2 1
24 144.09 temperature 10.0 30 > th dose independent rect. 2 1
27 144.09 humidity 50.0 30 > th dose independent rect. 2 1
31 144.09 atmosphere 1010.0 30 < th dose independent rect. 2 1
33 144.09 radiation 1.0 30 < th dose independent rect. 2 1
38 144.09 precipitation 0.1 30 < th dose independent rect. 2 1
39 144.09 temperature 10.0 30 > th dose independent rect. 3 23
40 144.09 radiation 1.0 30 < th dose dependent rect. 2 1
45 144.09 precipitation 0.1 30 < th dose dependent rect. 2 1
48 144.41 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 144.89 temperature 30.0 30 < th dose dependent rect. 2 1
57 145.75 wind 1.0 30 > th dose independent rect. 2 1
61 146.03 wind 9.0 30 < th dose independent rect. 3 23
107 149.20 wind 7.0 90 > th dose independent rect. 4 5
108 149.52 radiation 1.0 30 < th dose dependent rect. 5 2
112 149.93 wind 5.0 10 > th dose independent rect. 10 1
116 149.93 wind 5.0 10 > th dose dependent rect. 10 1
122 150.00 humidity 90.0 720 < th dose dependent rect. 24 2
123 150.12 wind 7.0 90 > th dose dependent rect. 8 1
125 150.31 wind 7.0 90 > th dose independent rect. 8 1
126 150.31 wind 7.0 90 > th dose dependent rect. 4 5
129 150.47 humidity 90.0 90 > th dose independent rect. 8 2
135 150.64 wind 9.0 90 > th dose dependent rect. 21 13
140 150.80 wind 1.0 10 < th dose independent rect. 6 22
152 150.81 humidity 90.0 90 > th dose dependent rect. 8 2
166 151.01 wind 1.0 10 < th dose independent rect. 9 19
173 151.28 wind 1.0 10 < th dose independent rect. 2 8
196 151.51 precipitation 0.1 10 < th dose independent rect. 3 23
197 151.51 precipitation 0.1 10 < th dose dependent rect. 3 23
198 151.58 wind 1.0 10 > th dose independent rect. 3 23
201 151.70 wind 1.0 10 > th dose independent rect. 15 23
207 151.78 wind 1.0 10 < th dose independent rect. 2 23
210 151.86 radiation 1.0 30 < th dose independent rect. 5 2
226 152.15 wind 1.0 10 < th dose independent rect. 23 5
228 152.21 wind 1.0 10 > th dose independent rect. 6 23
229 152.23 wind 1.0 10 > th dose independent sin 13 NA
233 152.28 wind 1.0 10 < th dose independent rect. 23 13
235 152.30 wind 1.0 10 > th dose independent rect. 3 21
237 152.32 wind 1.0 10 > th dose independent no NA NA
245 152.41 wind 1.0 10 < th dose independent rect. 17 19
263 152.50 wind 1.0 10 > th dose independent rect. 1 23
266 152.51 wind 1.0 10 < th dose independent rect. 23 11
268 152.51 wind 1.0 10 < th dose independent rect. 15 13
270 152.52 atmosphere 995.0 30 > th dose independent rect. 3 23
271 152.53 wind 1.0 10 < th dose independent rect. 17 11
288 152.60 wind 1.0 10 < th dose independent sin 1 NA
289 152.61 wind 1.0 10 < th dose independent rect. 23 19
337 152.73 wind 1.0 10 < th dose independent no NA NA
350 152.73 wind 1.0 10 < th dose independent rect. 11 23
367 152.82 wind 1.0 10 > th dose independent sin 2 NA
370 152.84 precipitation 0.1 270 > th dose independent rect. 5 4
372 152.84 precipitation 0.1 270 > th dose dependent rect. 5 4
374 152.85 wind 1.0 10 < th dose independent sin 13 NA
388 152.91 humidity 90.0 90 < th dose independent rect. 1 2
422 152.98 radiation 1.0 30 < th dose dependent rect. 5 9
426 153.01 wind 1.0 30 < th dose independent rect. 24 3
445 153.09 humidity 90.0 720 < th dose independent rect. 24 3
453 153.15 wind 1.0 10 < th dose independent rect. 11 17
459 153.17 wind 9.0 90 < th dose dependent rect. 3 21
460 153.18 wind 5.0 90 < th dose independent rect. 3 21
462 153.19 atmosphere 1005.0 30 > th dose independent rect. 24 3
463 153.19 precipitation 0.1 10 > th dose independent rect. 3 5
484 153.20 precipitation 0.1 10 > th dose independent rect. 3 3
488 153.20 precipitation 0.1 10 > th dose dependent rect. 3 3
531 153.35 wind 1.0 30 > th dose dependent rect. 2 1
547 153.39 precipitation 0.1 10 > th dose independent sin 1 NA
550 153.40 precipitation 0.1 10 > th dose dependent sin 1 NA
564 153.46 humidity 60.0 1440 > th dose independent rect. 5 4
565 153.46 wind 1.0 10 > th dose independent rect. 23 23
571 153.49 wind 1.0 10 < th dose dependent sin 0 NA
576 153.52 humidity 60.0 1440 > th dose independent rect. 7 2
583 153.55 humidity 90.0 720 < th dose independent rect. 24 1
591 153.57 wind 1.0 10 > th dose independent rect. 18 15
597 153.58 radiation 20.0 30 > th dose independent rect. 9 1
607 153.60 precipitation 0.1 270 > th dose independent rect. 2 1
610 153.60 precipitation 0.1 270 > th dose dependent rect. 2 1
625 153.69 humidity 80.0 1440 < th dose independent rect. 21 11
661 153.75 wind 1.0 10 > th dose independent rect. 3 11
662 153.75 wind 3.0 270 > th dose dependent rect. 5 1
684 153.78 wind 5.0 90 < th dose independent rect. 3 10
739 153.80 wind 1.0 10 > th dose independent rect. 10 23
742 153.81 wind 3.0 10 > th dose independent rect. 6 1
743 153.81 humidity 80.0 30 < th dose independent rect. 1 4
745 153.81 wind 3.0 10 > th dose dependent rect. 6 1
758 153.84 wind 1.0 10 > th dose independent rect. 20 13
768 153.85 wind 5.0 270 < th dose independent rect. 3 8
772 153.88 wind 3.0 90 > th dose independent rect. 4 1
775 153.90 wind 5.0 720 > th dose dependent rect. 22 12
777 153.91 wind 7.0 720 > th dose independent rect. 22 12
786 153.93 wind 1.0 10 < th dose dependent rect. 2 8
798 153.96 humidity 50.0 1440 > th dose dependent rect. 24 1
806 153.97 wind 1.0 10 < th dose dependent rect. 7 3
811 153.98 humidity 60.0 1440 > th dose independent rect. 21 12
824 154.01 wind 9.0 270 < th dose dependent rect. 3 9
845 154.04 humidity 60.0 1440 < th dose independent rect. 8 1
846 154.04 atmosphere 1015.0 1440 < th dose independent rect. 3 1
865 154.05 humidity 60.0 1440 < th dose dependent rect. 8 1
881 154.07 humidity 60.0 270 < th dose independent rect. 8 1
908 154.07 humidity 60.0 270 < th dose dependent rect. 8 1
950 154.12 humidity 60.0 90 < th dose dependent rect. 17 17
954 154.13 humidity 60.0 90 < th dose independent rect. 18 15
961 154.13 humidity 60.0 90 < th dose dependent rect. 18 15
963 154.14 humidity 60.0 30 < th dose independent rect. 17 17
966 154.15 humidity 80.0 1440 < th dose independent rect. 21 1
967 154.15 wind 1.0 10 < th dose independent rect. 7 3
972 154.16 humidity 60.0 30 < th dose independent rect. 9 1