BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0649400 Os04g0649400|AJ556181
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0649400 Homeodomain-like containing protein 325 1e-89
Os05g0118700 105 4e-23
Os04g0663600 97 1e-20
Os01g0854500 Homeobox domain containing protein 94 6e-20
Os12g0101600 90 1e-18
Os11g0102100 90 1e-18
Os01g0840300 Homeobox domain containing protein 85 4e-17
Os05g0564500 Homeodomain-like containing protein 70 1e-12
>Os04g0649400 Homeodomain-like containing protein
Length = 232
Score = 325 bits (834), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 166/232 (71%), Positives = 166/232 (71%)
Query: 1 MRLHHLHVAYLDHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCLRPLAPKISLPEPRK 60
MRLHHLHVAYLDHK KCLRPLAPKISLPEPRK
Sbjct: 1 MRLHHLHVAYLDHKASSSSSSPAPPSISPSSIPGSAAFPAFSFKCLRPLAPKISLPEPRK 60
Query: 61 MIAPPDFVVPRARNASKLLNYTVQVPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIE 120
MIAPPDFVVPRARNASKLLNYTVQVPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIE
Sbjct: 61 MIAPPDFVVPRARNASKLLNYTVQVPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIE 120
Query: 121 RITEELGKYGRIEGKNVFYWFQNHKARERQKQKRXXXXXXXXXXXXXXXXXANETKEAPE 180
RITEELGKYGRIEGKNVFYWFQNHKARERQKQKR ANETKEAPE
Sbjct: 121 RITEELGKYGRIEGKNVFYWFQNHKARERQKQKRAALLTLSTLDPSLLPATANETKEAPE 180
Query: 181 KKEKDVEDGLASCKRRCKXXXXXXXXXXXXXXXXXXXXCTDEVTLELFPLHP 232
KKEKDVEDGLASCKRRCK CTDEVTLELFPLHP
Sbjct: 181 KKEKDVEDGLASCKRRCKAWGDGAGDGDAVVATEAAGGCTDEVTLELFPLHP 232
>Os05g0118700
Length = 286
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 55/65 (84%)
Query: 90 TTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARER 149
TTRW P+ EQ+ +LE +YRGG+RTPN+ QI++IT L YGRIEGKNVFYWFQNHKAR+R
Sbjct: 25 TTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDR 84
Query: 150 QKQKR 154
QK +R
Sbjct: 85 QKLRR 89
>Os04g0663600
Length = 289
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 91 TRWNPSAEQIKVL-EMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARER 149
TRW P+ EQIK+L E+ Y G+R+PNS QI+RI L +YGRIEGKNVFYWFQNHKARER
Sbjct: 34 TRWTPTTEQIKILRELYYSCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARER 93
Query: 150 QKQK 153
QK++
Sbjct: 94 QKKR 97
>Os01g0854500 Homeobox domain containing protein
Length = 200
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQK 151
RWNP+AEQ+KVL L+R G+RTP++ QI+RI+ L +G++E KNVFYWFQNHKARER
Sbjct: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARERHH 73
Query: 152 QKR 154
K+
Sbjct: 74 HKK 76
>Os12g0101600
Length = 203
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 85 VPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNH 144
+P +TRW P+ EQ+ +LE +YR G+RTPN+ +I++IT L YGRIEGKNVFYWFQNH
Sbjct: 1 MPQTPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNH 60
Query: 145 K 145
K
Sbjct: 61 K 61
>Os11g0102100
Length = 203
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 85 VPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNH 144
+P +TRW P+ EQ+ +LE +YR G+RTPN+ +I++IT L YGRIEGKNVFYWFQNH
Sbjct: 1 MPQTPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNH 60
Query: 145 K 145
K
Sbjct: 61 K 61
>Os01g0840300 Homeobox domain containing protein
Length = 313
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 44/55 (80%)
Query: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKA 146
RW P+ EQI VLE LYR G+RTP + QI++IT L ++G IEGKNVFYWFQNHKA
Sbjct: 44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
>Os05g0564500 Homeodomain-like containing protein
Length = 476
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQK 151
RWNP EQI++LE ++ GM P +I RI +L +YG++ NVFYWFQN K+R + K
Sbjct: 72 RWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQNRKSRTKNK 131
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,046,945
Number of extensions: 198226
Number of successful extensions: 508
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 8
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)