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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0854500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeobox domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0216) R2 : 0.00277
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0511 (0.0454) R2dN8 : 0.00357 R2N8 : 0.00277
σ : 0.406
deviance : 75.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.58 0.398 3.28 0.0952 0.154 0.381 -0.0955 -0.542 0.105 6.7 0.0875 4349 -- --
71.75 0.395 3.27 0.103 0.154 0.318 -0.0738 -- 0.104 6.91 -0.06748 3866 -- --
71.6 0.394 3.28 0.0942 0.153 0.381 -- -0.542 0.105 6.88 0.09124 4348 -- --
71.77 0.395 3.27 0.0889 0.151 0.316 -- -- 0.0982 6.88 -0.1048 3920 -- --
72.82 0.397 3.28 0.0915 -- 0.38 -- -0.454 0.109 -- 0.1127 4090 -- --
73.7 0.402 3.28 0.173 0.154 -- -0.0713 -- 0.0674 6.82 -- -- -- --
73.71 0.402 3.28 0.172 0.154 -- -- -- 0.0676 6.93 -- -- -- --
72.96 0.398 3.28 0.09 -- 0.32 -- -- 0.103 -- -0.08236 3920 -- --
71.96 0.395 3.27 -- 0.152 0.345 -- -- 0.0947 6.89 -0.04717 3870 -- --
74.96 0.405 3.28 0.175 -- -- -- -- 0.0705 -- -- -- -- --
74.49 0.404 3.28 -- 0.156 -- -- -- 0.0485 6.86 -- -- -- --
73.15 0.398 3.28 -- -- 0.35 -- -- 0.0964 -- -0.01196 3860 -- --
75.76 0.406 3.29 -- -- -- -- -- 0.0511 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.76 wind 1.0 10 < th dose independent rect. 15 7
2 60.80 wind 1.0 10 < th dose independent rect. 17 5
4 60.81 wind 1.0 10 < th dose dependent rect. 15 7
5 60.83 wind 1.0 10 < th dose dependent rect. 17 5
7 60.84 wind 1.0 10 < th dose independent rect. 21 1
11 60.84 wind 1.0 10 < th dose dependent rect. 21 1
17 66.63 precipitation 0.1 270 > th dose independent rect. 20 1
18 66.63 precipitation 0.1 270 > th dose dependent rect. 20 1
23 67.38 atmosphere 1005.0 30 > th dose dependent rect. 20 3
25 67.70 atmosphere 1005.0 30 > th dose independent rect. 20 3
35 68.90 atmosphere 995.0 10 > th dose independent rect. 10 10
36 68.91 temperature 20.0 30 > th dose dependent rect. 20 3
45 69.24 atmosphere 995.0 30 > th dose independent rect. 23 21
53 69.32 temperature 20.0 30 > th dose independent rect. 20 3
59 69.42 precipitation 0.1 10 < th dose independent rect. 10 10
60 69.42 precipitation 0.1 10 < th dose dependent rect. 10 10
61 69.44 wind 5.0 30 < th dose independent rect. 20 3
62 69.46 wind 1.0 10 > th dose independent rect. 10 10
64 69.46 wind 9.0 10 < th dose independent rect. 20 14
65 69.46 temperature 15.0 10 > th dose independent rect. 20 14
67 69.48 temperature 10.0 10 > th dose independent rect. 10 10
69 69.48 atmosphere 1015.0 10 < th dose independent rect. 10 10
71 69.48 humidity 50.0 10 > th dose independent rect. 20 14
72 69.48 atmosphere 995.0 10 > th dose independent rect. 20 14
75 69.53 wind 9.0 10 < th dose independent rect. 10 10
77 69.54 temperature 10.0 30 > th dose dependent rect. 23 7
89 69.58 precipitation 0.1 30 < th dose independent rect. 20 14
90 69.58 precipitation 0.1 30 < th dose dependent rect. 20 14
91 69.59 humidity 80.0 10 > th dose dependent rect. 22 1
92 69.59 wind 7.0 10 < th dose dependent rect. 20 3
94 69.61 wind 1.0 90 > th dose dependent rect. 5 5
96 69.63 temperature 10.0 1440 > th dose independent rect. 11 10
99 69.63 temperature 10.0 1440 > th dose independent rect. 21 14
102 69.63 atmosphere 995.0 1440 > th dose independent rect. 21 14
108 69.68 humidity 80.0 30 > th dose independent rect. 20 3
116 69.72 precipitation 0.1 30 < th dose independent rect. 6 17
117 69.72 precipitation 0.1 30 < th dose dependent rect. 6 17
126 69.77 precipitation 0.1 30 < th dose independent rect. 20 3
127 69.77 precipitation 0.1 30 < th dose dependent rect. 20 3
130 69.79 humidity 60.0 14400 > th dose independent rect. 24 7
133 69.81 humidity 60.0 30 > th dose dependent rect. 20 3
134 69.82 humidity 70.0 1440 > th dose independent rect. 24 7
137 69.83 atmosphere 1015.0 10 < th dose independent rect. 20 14
140 69.84 radiation 10.0 4320 < th dose dependent rect. 21 3
144 69.85 temperature 15.0 1440 > th dose independent rect. 21 3
146 69.85 radiation 30.0 1440 < th dose independent rect. 24 7
159 69.90 temperature 15.0 30 > th dose independent rect. 23 7
160 69.90 radiation 10.0 10 < th dose independent rect. 23 7
161 69.90 temperature 15.0 30 > th dose independent rect. 23 21
164 69.92 wind 9.0 10 < th dose independent rect. 6 17
166 69.92 wind 5.0 90 > th dose dependent rect. 4 5
171 69.93 temperature 30.0 1440 < th dose independent rect. 21 3
175 69.93 humidity 50.0 1440 > th dose independent rect. 21 3
181 69.93 atmosphere 995.0 1440 > th dose independent rect. 21 3
182 69.93 radiation 1.0 1440 < th dose independent rect. 21 3
203 69.93 temperature 10.0 1440 > th dose independent rect. 24 21
206 69.93 wind 5.0 90 > th dose dependent rect. 7 2
210 69.94 wind 9.0 10 < th dose independent rect. 23 7
214 69.94 temperature 10.0 1440 > th dose independent rect. 24 7
217 69.94 temperature 30.0 10 < th dose independent rect. 23 7
219 69.94 temperature 30.0 1440 < th dose independent rect. 24 7
223 69.94 humidity 50.0 10 > th dose independent rect. 23 7
229 69.94 humidity 50.0 1440 > th dose independent rect. 24 7
234 69.94 atmosphere 995.0 10 > th dose independent rect. 23 7
236 69.94 atmosphere 995.0 1440 > th dose independent rect. 24 7
248 69.94 temperature 10.0 10 > th dose independent rect. 6 17
252 69.94 temperature 10.0 1440 > th dose independent rect. 7 17
255 69.94 atmosphere 1015.0 10 < th dose independent rect. 6 17
263 69.94 radiation 40.0 30 < th dose dependent rect. 23 7
266 69.95 radiation 20.0 30 < th dose dependent rect. 23 8
275 69.97 temperature 10.0 30 > th dose independent rect. 20 3
277 69.97 temperature 30.0 30 < th dose independent rect. 20 3
278 69.97 humidity 50.0 30 > th dose independent rect. 20 3
282 69.97 atmosphere 1010.0 30 < th dose independent rect. 20 3
284 69.97 radiation 1.0 30 < th dose independent rect. 20 3
291 69.97 radiation 1.0 30 < th dose dependent rect. 20 3
301 69.98 wind 9.0 30 < th dose independent rect. 23 21
315 70.00 humidity 80.0 14400 < th dose dependent rect. 1 8
321 70.01 humidity 50.0 30 > th dose dependent rect. 23 7
326 70.02 radiation 1.0 90 < th dose dependent rect. 23 20
354 70.05 humidity 80.0 14400 < th dose dependent rect. 7 1
393 70.10 temperature 30.0 30 < th dose independent rect. 20 14
404 70.12 atmosphere 1005.0 30 > th dose dependent rect. 17 6
407 70.13 wind 5.0 90 > th dose independent rect. 7 2
414 70.14 wind 7.0 90 > th dose independent rect. 1 8
424 70.16 precipitation 0.1 30 < th dose independent rect. 23 7
426 70.16 precipitation 0.1 30 < th dose dependent rect. 23 7
461 70.22 wind 1.0 90 > th dose independent rect. 6 17
467 70.23 wind 1.0 10 > th dose independent rect. 22 1
468 70.23 temperature 20.0 10 > th dose independent rect. 22 1
488 70.24 temperature 10.0 30 > th dose dependent rect. 23 21
519 70.28 precipitation 0.1 10 < th dose independent rect. 22 1
521 70.28 precipitation 0.1 720 < th dose independent rect. 15 8
522 70.28 precipitation 0.1 10 < th dose dependent rect. 22 1
524 70.28 precipitation 0.1 720 < th dose dependent rect. 15 8
525 70.28 radiation 20.0 30 < th dose dependent rect. 23 11
533 70.30 wind 1.0 30 > th dose independent rect. 20 3
594 70.32 temperature 10.0 10 > th dose independent rect. 22 1
596 70.32 temperature 30.0 10 < th dose independent rect. 22 1
597 70.32 humidity 50.0 10 > th dose independent rect. 22 1
601 70.32 atmosphere 995.0 10 > th dose independent rect. 22 1
602 70.32 atmosphere 1010.0 10 < th dose independent rect. 22 1
604 70.32 radiation 1.0 10 < th dose independent rect. 22 1
614 70.32 atmosphere 995.0 720 > th dose independent rect. 23 16
616 70.32 temperature 10.0 10 > th dose independent rect. 23 23
618 70.32 radiation 1.0 10 < th dose dependent rect. 22 1
683 70.38 wind 9.0 1440 < th dose independent rect. 21 3
684 70.38 temperature 10.0 720 > th dose independent rect. 15 8
687 70.38 temperature 10.0 720 > th dose independent rect. 23 16
693 70.40 humidity 80.0 90 < th dose independent rect. 5 5
694 70.40 radiation 10.0 30 < th dose independent rect. 23 11
698 70.40 wind 9.0 30 < th dose dependent rect. 23 7
699 70.41 wind 1.0 90 > th dose independent rect. 5 5
702 70.41 precipitation 0.1 30 < th dose independent rect. 23 21
705 70.41 precipitation 0.1 30 < th dose dependent rect. 23 21
717 70.42 atmosphere 995.0 10 > th dose independent rect. 10 20
721 70.43 wind 5.0 14400 < th dose independent rect. 11 1
724 70.43 temperature 10.0 10 > th dose dependent rect. 10 10
728 70.44 humidity 80.0 90 < th dose independent rect. 7 3
757 70.48 humidity 80.0 14400 < th dose independent rect. 7 1
765 70.48 wind 9.0 30 < th dose dependent rect. 23 21
792 70.51 temperature 30.0 270 < th dose dependent rect. 5 2
798 70.52 temperature 10.0 720 > th dose independent rect. 3 8
799 70.52 atmosphere 995.0 720 > th dose independent rect. 3 8
803 70.52 temperature 10.0 720 > th dose independent rect. 11 16
807 70.52 humidity 90.0 30 < th dose dependent rect. 20 14
811 70.53 radiation 1.0 90 < th dose independent rect. 23 20
827 70.55 atmosphere 995.0 270 > th dose independent rect. 8 10
830 70.55 humidity 90.0 30 < th dose dependent rect. 5 5
834 70.56 radiation 40.0 90 < th dose independent rect. 20 14
862 70.57 humidity 90.0 30 < th dose dependent rect. 1 9
864 70.58 humidity 80.0 10 < th dose independent rect. 6 4
868 70.58 atmosphere 1010.0 90 < th dose independent rect. 23 7
873 70.58 temperature 30.0 10 < th dose dependent rect. 6 5
894 70.60 atmosphere 1005.0 10 > th dose dependent rect. 2 2
904 70.61 humidity 80.0 90 < th dose independent rect. 1 9
907 70.61 precipitation 0.1 720 < th dose independent rect. 11 16
911 70.61 precipitation 0.1 720 < th dose dependent rect. 11 16
912 70.62 wind 5.0 14400 > th dose independent rect. 11 1
927 70.64 humidity 80.0 90 < th dose independent rect. 23 11
947 70.65 humidity 80.0 90 < th dose independent rect. 21 13
962 70.66 wind 1.0 90 > th dose independent rect. 20 14
964 70.66 atmosphere 995.0 30 > th dose independent rect. 3 23
971 70.67 wind 9.0 720 < th dose independent rect. 3 8