BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0854500 Os01g0854500|AK102203
(200 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0854500 Homeobox domain containing protein 348 1e-96
Os04g0649400 Homeodomain-like containing protein 81 5e-16
Os05g0118700 80 6e-16
Os12g0101600 77 1e-14
Os11g0102100 77 1e-14
Os04g0663600 75 4e-14
Os01g0840300 Homeobox domain containing protein 74 6e-14
>Os01g0854500 Homeobox domain containing protein
Length = 200
Score = 348 bits (894), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 172/200 (86%), Positives = 172/200 (86%)
Query: 1 MEALSGRVGVKCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVF 60
MEALSGRVGVKCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVF
Sbjct: 1 MEALSGRVGVKCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVF 60
Query: 61 YWFQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAAHEGDADLVLQPPESKREARSYGH 120
YWFQN RAAAHEGDADLVLQPPESKREARSYGH
Sbjct: 61 YWFQNHKARERHHHKKRRRGASSPDSGSNDDDGRAAAHEGDADLVLQPPESKREARSYGH 120
Query: 121 HHRLMTCYVRDVVETEAMWERPTREVETLELFPLKSYDLEVDKVRYVRGGGGEQCREISF 180
HHRLMTCYVRDVVETEAMWERPTREVETLELFPLKSYDLEVDKVRYVRGGGGEQCREISF
Sbjct: 121 HHRLMTCYVRDVVETEAMWERPTREVETLELFPLKSYDLEVDKVRYVRGGGGEQCREISF 180
Query: 181 FDVAAGRDPPLELRLCSFGL 200
FDVAAGRDPPLELRLCSFGL
Sbjct: 181 FDVAAGRDPPLELRLCSFGL 200
>Os04g0649400 Homeodomain-like containing protein
Length = 232
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RWNP+AEQ+KVL L+R G+RTP++ QI+RI+ L +G++E KNVFYWFQN
Sbjct: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQN 143
>Os05g0118700
Length = 286
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RW PT EQ+ +L E++R GLRTP+ QIQ+I+ HLS +G++E KNVFYWFQN
Sbjct: 27 RWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQN 78
>Os12g0101600
Length = 203
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 43/52 (82%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RW PT EQ+ +L E++R+G+RTP+ +IQ+I+ HL+ +G++E KNVFYWFQN
Sbjct: 8 RWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQN 59
>Os11g0102100
Length = 203
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 43/52 (82%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RW PT EQ+ +L E++R+G+RTP+ +IQ+I+ HL+ +G++E KNVFYWFQN
Sbjct: 8 RWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQN 59
>Os04g0663600
Length = 289
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Query: 14 RWNPTAEQVKVLTELFRA-GLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RW PT EQ+K+L EL+ + G+R+P++EQIQRI+ L +G++E KNVFYWFQN
Sbjct: 35 RWTPTTEQIKILRELYYSCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQN 87
>Os01g0840300 Homeobox domain containing protein
Length = 313
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 13 GRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RW PT EQ+ VL L+R GLRTP+ EQIQ+I+ L G +E KNVFYWFQN
Sbjct: 43 ARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQN 95
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,615,562
Number of extensions: 230681
Number of successful extensions: 559
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 7
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)