Os04g0649400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os04g0649400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 223.17 | 0.702 | 8.4 | 0.155 | 1.1 | -1.72 | 0.557 | -1.42 | -0.946 | 8.22 | 21.56 | 1577 | -- | -- |
| 218.55 | 0.689 | 8.36 | 0.335 | 0.925 | -1.47 | 0.668 | -- | -0.854 | 7.54 | 22.2 | 960 | -- | -- |
| 222.63 | 0.695 | 8.39 | 0.277 | 1 | -1.73 | -- | -1.21 | -0.906 | 8.05 | 21.51 | 2098 | -- | -- |
| 219.84 | 0.691 | 8.36 | 0.364 | 0.932 | -1.47 | -- | -- | -0.851 | 7.58 | 22.18 | 967 | -- | -- |
| 276.3 | 0.774 | 8.42 | 0.336 | -- | -1.87 | -- | -1.34 | -0.864 | -- | 21.58 | 2122 | -- | -- |
| 306.85 | 0.821 | 8.46 | -0.158 | 1.1 | -- | 0.543 | -- | -1.34 | 8.25 | -- | -- | -- | -- |
| 307.74 | 0.822 | 8.46 | -0.142 | 1.1 | -- | -- | -- | -1.34 | 8.32 | -- | -- | -- | -- |
| 259.04 | 0.75 | 8.37 | 0.396 | -- | -1.59 | -- | -- | -0.797 | -- | 22.2 | 777 | -- | -- |
| 222.88 | 0.695 | 8.37 | -- | 0.935 | -1.37 | -- | -- | -0.908 | 7.57 | 22.27 | 950 | -- | -- |
| 374.58 | 0.904 | 8.49 | -0.135 | -- | -- | -- | -- | -1.32 | -- | -- | -- | -- | -- |
| 308.27 | 0.821 | 8.46 | -- | 1.1 | -- | -- | -- | -1.32 | 8.33 | -- | -- | -- | -- |
| 262.93 | 0.755 | 8.39 | -- | -- | -1.52 | -- | -- | -0.866 | -- | 22.14 | 777 | -- | -- |
| 375.06 | 0.904 | 8.49 | -- | -- | -- | -- | -- | -1.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 225.07 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 2 | 225.52 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 5 | 227.18 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 6 | 227.49 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 9 | 227.63 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 11 | 228.09 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 14 | 229.10 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 15 | 229.12 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 16 | 229.17 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 40 | 231.09 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 43 | 231.34 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 50 | 231.73 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 64 | 232.39 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 69 | 232.55 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 97 | 233.40 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 102 | 233.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 105 | 233.50 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 106 | 233.50 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 111 | 233.65 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 123 | 233.96 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 138 | 234.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 141 | 234.33 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 142 | 234.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 147 | 234.37 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 154 | 234.49 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 157 | 234.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 159 | 234.59 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 166 | 234.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 167 | 234.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 168 | 234.68 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 173 | 234.76 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 180 | 234.90 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 334 | 236.90 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 354 | 237.07 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 400 | 237.47 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 416 | 237.61 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 444 | 237.82 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 504 | 238.32 | temperature | 20.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 544 | 238.62 | temperature | 20.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 564 | 238.76 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 567 | 238.80 | temperature | 20.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 621 | 239.15 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 623 | 239.17 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 685 | 239.53 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 692 | 239.56 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 732 | 239.87 | temperature | 10.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 738 | 239.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 751 | 240.05 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 758 | 240.10 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 827 | 240.57 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 828 | 240.57 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 849 | 240.67 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 852 | 240.71 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 7 |