BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0649400 Os04g0649400|AJ556181
(232 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G46480.1 | chr1:17236903-17237953 REVERSE LENGTH=252 125 2e-29
AT2G28610.1 | chr2:12262115-12263286 FORWARD LENGTH=245 102 1e-22
AT5G59340.1 | chr5:23933408-23934627 REVERSE LENGTH=261 100 6e-22
AT3G18010.1 | chr3:6161155-6163183 REVERSE LENGTH=351 100 7e-22
AT2G01500.1 | chr2:224470-225997 REVERSE LENGTH=272 97 5e-21
AT3G11260.1 | chr3:3527606-3528263 FORWARD LENGTH=183 97 8e-21
AT5G05770.1 | chr5:1734487-1734855 FORWARD LENGTH=123 94 6e-20
AT2G17950.1 | chr2:7809100-7810671 REVERSE LENGTH=293 89 1e-18
AT2G33880.1 | chr2:14341639-14343597 REVERSE LENGTH=379 70 1e-12
AT5G45980.1 | chr5:18648921-18650698 FORWARD LENGTH=326 66 1e-11
AT4G35550.1 | chr4:16875814-16877167 REVERSE LENGTH=269 64 7e-11
AT1G20700.1 | chr1:7182558-7183866 FORWARD LENGTH=212 64 8e-11
AT1G20710.1 | chr1:7184485-7185267 FORWARD LENGTH=198 59 2e-09
AT3G03660.2 | chr3:889515-892162 REVERSE LENGTH=298 55 2e-08
AT5G17810.1 | chr5:5880576-5882602 REVERSE LENGTH=269 53 2e-07
>AT1G46480.1 | chr1:17236903-17237953 REVERSE LENGTH=252
Length = 251
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 89 GTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARE 148
G TRWNP+ EQI +LEMLY+GGMRTPN+ QIE IT +LGKYG+IEGKNVFYWFQNHKARE
Sbjct: 87 GGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARE 146
Query: 149 RQKQKRXXXXXXXXXXXXXXXXXANETKEAPEKKEKDVE------------DGLASCKRR 196
RQKQKR N + + ++ KR
Sbjct: 147 RQKQKRNNLISLSCQSSFTTTGVFNPSVTMKTRTSSSLDIMREPMVEKEELVEENEYKRT 206
Query: 197 CKXXXXXXXXXXXXXXXXXXXXCT------DEVTLELFPLHP 232
C+ T D VTLELFPLHP
Sbjct: 207 CRSWGFENLEIENRRNKNSSTMATTFNKIIDNVTLELFPLHP 248
>AT2G28610.1 | chr2:12262115-12263286 FORWARD LENGTH=245
Length = 244
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 55/67 (82%)
Query: 88 AGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKAR 147
+TRW P+ EQ+ +LE +YR G+RTPN+VQI++IT L YGRIEGKNVFYWFQNHKAR
Sbjct: 4 VASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKAR 63
Query: 148 ERQKQKR 154
+RQK ++
Sbjct: 64 DRQKLRK 70
>AT5G59340.1 | chr5:23933408-23934627 REVERSE LENGTH=261
Length = 260
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 83 VQVPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQ 142
V A ++RWNP+ +QI +LE LY+ G+RTP++ QI++IT L YG IEGKNVFYWFQ
Sbjct: 5 VNAGTASSSRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQ 64
Query: 143 NHKARERQKQKR 154
NHKAR+RQKQK+
Sbjct: 65 NHKARQRQKQKQ 76
>AT3G18010.1 | chr3:6161155-6163183 REVERSE LENGTH=351
Length = 350
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 10/119 (8%)
Query: 46 LRPLAPKI-SLP--------EPRKMIAPPDFVVPRARNASKLLNYTVQ-VPAAGTTRWNP 95
LRPL P++ S P + R +A + + +LN Q P ++RWNP
Sbjct: 20 LRPLIPRLTSCPTAAVNTNSDHRFNMAVVTMTAEQNKRELMMLNSEPQHPPVMVSSRWNP 79
Query: 96 SAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQKR 154
+ +Q++VLE LYR G RTP++ I++IT +L +YG+IEGKNVFYWFQNHKARERQK++R
Sbjct: 80 TPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKRRR 138
>AT2G01500.1 | chr2:224470-225997 REVERSE LENGTH=272
Length = 271
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 49/62 (79%)
Query: 85 VPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNH 144
+PAA T RWNP+ EQI LE LYR G RTP + QI++I +L KYGRIEGKNVFYWFQNH
Sbjct: 54 IPAAATLRWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNH 113
Query: 145 KA 146
KA
Sbjct: 114 KA 115
>AT3G11260.1 | chr3:3527606-3528263 FORWARD LENGTH=183
Length = 182
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 53/63 (84%)
Query: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQK 151
RWNP+ EQ+K+L L+R G+RTP + QI++I+ EL YG+IE KNVFYWFQNHKARERQK
Sbjct: 24 RWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQK 83
Query: 152 QKR 154
+++
Sbjct: 84 RRK 86
>AT5G05770.1 | chr5:1734487-1734855 FORWARD LENGTH=123
Length = 122
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 52/64 (81%)
Query: 88 AGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKAR 147
A RWNP+ EQ+K+L L++ G+RTP++ QI++I+ EL YG+IE KNVFYWFQNHKAR
Sbjct: 25 AKCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKAR 84
Query: 148 ERQK 151
ERQK
Sbjct: 85 ERQK 88
>AT2G17950.1 | chr2:7809100-7810671 REVERSE LENGTH=293
Length = 292
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
Query: 90 TTRWNPSAEQIKVL-EMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARE 148
+TRW P+ EQIK+L E+ Y +R+P + QI++IT L ++G+IEGKNVFYWFQNHKARE
Sbjct: 36 STRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARE 95
Query: 149 RQKQK 153
RQK++
Sbjct: 96 RQKKR 100
>AT2G33880.1 | chr2:14341639-14343597 REVERSE LENGTH=379
Length = 378
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQK 151
RWNP EQI++LE ++ GM P +I RI +L +YG++ NVFYWFQN K+R + K
Sbjct: 55 RWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114
>AT5G45980.1 | chr5:18648921-18650698 FORWARD LENGTH=326
Length = 325
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQK 151
RWNP EQI++LE ++ G P +I+RI L +YG+I NVFYWFQN K+R + K
Sbjct: 55 RWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 114
>AT4G35550.1 | chr4:16875814-16877167 REVERSE LENGTH=269
Length = 268
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 44/61 (72%)
Query: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQK 151
RW P+ Q+++LE ++ G TP+ +I+ ITEEL ++G+I +NV+ WFQN +AR ++K
Sbjct: 99 RWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRK 158
Query: 152 Q 152
Q
Sbjct: 159 Q 159
>AT1G20700.1 | chr1:7182558-7183866 FORWARD LENGTH=212
Length = 211
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQK 151
RW P++ Q+++LE +Y G TPN +I I EL ++G+I NV+ WFQN +AR ++K
Sbjct: 95 RWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRK 154
Query: 152 Q 152
Q
Sbjct: 155 Q 155
>AT1G20710.1 | chr1:7184485-7185267 FORWARD LENGTH=198
Length = 197
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 99 QIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQ 152
Q+++LE +Y+ G TPN +I+ IT EL ++G+I KNV++WFQN +AR ++KQ
Sbjct: 86 QLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRKQ 139
>AT3G03660.2 | chr3:889515-892162 REVERSE LENGTH=298
Length = 297
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 91 TRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQN 143
+RW+P EQI +LE ++ GM P + RI + L K+G + NVFYWFQN
Sbjct: 32 SRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQN 84
>AT5G17810.1 | chr5:5880576-5882602 REVERSE LENGTH=269
Length = 268
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQN 143
RW+P EQI +LE ++ G P + RI + L K+G + NVFYWFQN
Sbjct: 21 RWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQN 72
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,786,438
Number of extensions: 118810
Number of successful extensions: 378
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 15
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)