Os01g0840300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeobox domain containing protein.
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Os01g0840300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeobox domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 270.64 | 0.773 | 4.15 | -2.26 | 0.822 | -2.15 | -0.797 | 0.489 | -0.523 | 13.8 | 14.4 | 123 | 18.1 | 20 |
| 270.86 | 0.767 | 4.16 | -2.3 | 0.817 | -2.14 | -0.759 | -- | -0.527 | 13.8 | 14.4 | 123 | 18.1 | 19.9 |
| 273 | 0.77 | 4.15 | -2.3 | 0.826 | -2.16 | -- | 0.198 | -0.526 | 13.8 | 14.4 | 126 | 18.1 | 20 |
| 273.03 | 0.77 | 4.16 | -2.33 | 0.823 | -2.16 | -- | -- | -0.535 | 13.8 | 14.4 | 125 | 18.1 | 19.9 |
| 307.29 | 0.816 | 4.15 | -2.25 | -- | -1.91 | -- | 0.598 | -0.51 | -- | 12.16 | 131 | 18 | 19.8 |
| 354.64 | 0.883 | 4.23 | -2.65 | 0.955 | -- | -0.68 | -- | -0.784 | 16 | -- | -- | -- | -- |
| 355.9 | 0.883 | 4.23 | -2.66 | 0.954 | -- | -- | -- | -0.788 | 16.1 | -- | -- | -- | -- |
| 302.23 | 0.81 | 4.19 | -2.41 | -- | -2.19 | -- | -- | -0.658 | -- | 3.959 | 170 | 17.4 | 20.2 |
| 413.42 | 0.947 | 4.09 | -- | 0.868 | -2.72 | -- | -- | -0.321 | 13.3 | 14.48 | 123 | 18.2 | 19.9 |
| 405.32 | 0.941 | 4.23 | -2.7 | -- | -- | -- | -- | -0.813 | -- | -- | -- | -- | -- |
| 542.38 | 1.09 | 4.16 | -- | 1.01 | -- | -- | -- | -0.492 | 16.1 | -- | -- | -- | -- |
| 419.38 | 0.954 | 4.13 | -- | -- | -2.87 | -- | -- | -0.238 | -- | 14.18 | 369 | 16.3 | 18.9 |
| 597.41 | 1.14 | 4.16 | -- | -- | -- | -- | -- | -0.514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 275.85 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 18 | 20 |
| 8 | 281.83 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 19 | 20 |
| 30 | 288.92 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 31 | 288.97 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 9 |
| 50 | 293.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 10 |
| 68 | 295.13 | temperature | 15.0 | 90 | > th | dose independent | rect. | 18 | 20 |
| 75 | 296.06 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 13 |
| 76 | 296.15 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 9 |
| 133 | 300.52 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 146 | 301.22 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 151 | 301.45 | temperature | 25.0 | 90 | > th | dose independent | rect. | 6 | 8 |
| 153 | 301.62 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 15 |
| 157 | 301.80 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 14 | 4 |
| 169 | 302.06 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 14 | 4 |
| 170 | 302.06 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 13 |
| 183 | 302.62 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 191 | 303.06 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 192 | 303.15 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 198 | 303.33 | temperature | 10.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 218 | 304.08 | temperature | 25.0 | 90 | > th | dose independent | rect. | 14 | 4 |
| 219 | 304.12 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 222 | 304.27 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 18 | 20 |
| 228 | 304.41 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 13 |
| 237 | 304.51 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 250 | 304.75 | temperature | 10.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 275 | 305.22 | radiation | 1.0 | 90 | > th | dose independent | rect. | 14 | 4 |
| 276 | 305.23 | humidity | 90.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 293 | 305.55 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 311 | 305.86 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 338 | 306.22 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 345 | 306.25 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 346 | 306.26 | radiation | 1.0 | 90 | > th | dose independent | rect. | 14 | 15 |
| 347 | 306.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 21 |
| 373 | 306.43 | humidity | 90.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 377 | 306.45 | wind | 9.0 | 90 | < th | dose independent | rect. | 18 | 20 |
| 388 | 306.57 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 394 | 306.61 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 396 | 306.63 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 404 | 306.73 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 409 | 306.76 | temperature | 25.0 | 10 | > th | dose independent | rect. | 6 | 9 |
| 428 | 306.89 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 14 | 4 |
| 429 | 306.89 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 14 | 4 |
| 433 | 306.92 | wind | 9.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 434 | 306.93 | radiation | 40.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 448 | 307.04 | temperature | 25.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 451 | 307.09 | wind | 1.0 | 90 | > th | dose independent | rect. | 14 | 4 |
| 474 | 307.33 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 18 | 20 |
| 476 | 307.35 | temperature | 10.0 | 90 | > th | dose independent | rect. | 14 | 4 |
| 478 | 307.35 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 498 | 307.49 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 2 |
| 593 | 308.22 | humidity | 70.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 651 | 308.64 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 22 |
| 676 | 308.90 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 693 | 309.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 1 |
| 694 | 309.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 700 | 309.08 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 713 | 309.18 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 22 |
| 727 | 309.28 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 747 | 309.37 | wind | 1.0 | 90 | > th | dose dependent | rect. | 14 | 4 |
| 758 | 309.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 760 | 309.41 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 780 | 309.51 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 18 | 20 |
| 783 | 309.51 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 18 | 20 |
| 826 | 309.85 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 21 |
| 832 | 309.89 | wind | 1.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 891 | 310.35 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 23 |
| 926 | 310.54 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 23 |
| 934 | 310.60 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 957 | 310.70 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |