BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0840300 Os01g0840300|Os01g0840300
(313 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0840300 Homeobox domain containing protein 305 3e-83
Os05g0118700 89 6e-18
Os12g0101600 85 6e-17
Os11g0102100 85 6e-17
Os04g0649400 Homeodomain-like containing protein 85 7e-17
Os04g0663600 84 1e-16
Os01g0854500 Homeobox domain containing protein 80 2e-15
>Os01g0840300 Homeobox domain containing protein
Length = 313
Score = 305 bits (781), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 166/272 (61%), Positives = 166/272 (61%)
Query: 42 NARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKAXXX 101
NARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA
Sbjct: 42 NARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQR 101
Query: 102 XXXXXXSFDYFSKXXXXXXXXXXXXXXXXXXFPLXXXXXXXXXXXXXXXXXXXXXCNAGG 161
SFDYFSK FPL CNAGG
Sbjct: 102 QKQKQQSFDYFSKLFRRPPPLPVLHRPLARPFPLAMAPTAMPPPPPPPATTTTAACNAGG 161
Query: 162 VMFRTPSFMPVATNNASYYPQQQTPLLYPGMEVCPHDKSTAQPPATTTMYLQAPPSSAHL 221
VMFRTPSFMPVATNNASYYPQQQTPLLYPGMEVCPHDKSTAQPPATTTMYLQAPPSSAHL
Sbjct: 162 VMFRTPSFMPVATNNASYYPQQQTPLLYPGMEVCPHDKSTAQPPATTTMYLQAPPSSAHL 221
Query: 222 XXXXXXXXXXXXXXXXXXXXXXXXXTLQLFPLQPTFVLPDHKPLRAGXXXXXXXXXXXXX 281
TLQLFPLQPTFVLPDHKPLRAG
Sbjct: 222 AAAAGRGAAEAEGHGRRGGGAGGRETLQLFPLQPTFVLPDHKPLRAGSACAAVSPTTPSA 281
Query: 282 XXXXXXXXXXXXXXXXXXXXFYDFFGVHSGGR 313
FYDFFGVHSGGR
Sbjct: 282 SASFSWESESSDSPSSEAPPFYDFFGVHSGGR 313
>Os05g0118700
Length = 286
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 44/55 (80%)
Query: 44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RW PT EQ+ +LE +YR GLRTP A QIQQITA L +G IEGKNVFYWFQNHKA
Sbjct: 27 RWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKA 81
>Os12g0101600
Length = 203
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 44/56 (78%)
Query: 42 NARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHK 97
+ RW PT EQ+ +LE +YR G+RTP A +IQQITA L +G IEGKNVFYWFQNHK
Sbjct: 6 STRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHK 61
>Os11g0102100
Length = 203
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 44/56 (78%)
Query: 42 NARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHK 97
+ RW PT EQ+ +LE +YR G+RTP A +IQQITA L +G IEGKNVFYWFQNHK
Sbjct: 6 STRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHK 61
>Os04g0649400 Homeodomain-like containing protein
Length = 232
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 44/55 (80%)
Query: 44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RW P+ EQI VLE LYR G+RTP + QI++IT L ++G IEGKNVFYWFQNHKA
Sbjct: 92 RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKA 146
>Os04g0663600
Length = 289
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 44 RWTPTKEQIAVLEGLYRQ-GLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RWTPT EQI +L LY G+R+P +EQIQ+I A LR++G IEGKNVFYWFQNHKA
Sbjct: 35 RWTPTTEQIKILRELYYSCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKA 90
>Os01g0854500 Homeobox domain containing protein
Length = 200
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 41/56 (73%)
Query: 43 ARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RW PT EQ+ VL L+R GLRTP+ EQIQ+I+ L G +E KNVFYWFQNHKA
Sbjct: 13 GRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKA 68
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,353,929
Number of extensions: 177550
Number of successful extensions: 559
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 7
Length of query: 313
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 212
Effective length of database: 11,762,187
Effective search space: 2493583644
Effective search space used: 2493583644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)