BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0840300 Os01g0840300|Os01g0840300
(313 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59340.1 | chr5:23933408-23934627 REVERSE LENGTH=261 105 4e-23
AT3G18010.1 | chr3:6161155-6163183 REVERSE LENGTH=351 94 1e-19
AT2G01500.1 | chr2:224470-225997 REVERSE LENGTH=272 93 2e-19
AT2G28610.1 | chr2:12262115-12263286 FORWARD LENGTH=245 89 2e-18
AT2G17950.1 | chr2:7809100-7810671 REVERSE LENGTH=293 88 6e-18
AT1G46480.1 | chr1:17236903-17237953 REVERSE LENGTH=252 87 1e-17
AT3G11260.1 | chr3:3527606-3528263 FORWARD LENGTH=183 84 9e-17
AT5G05770.1 | chr5:1734487-1734855 FORWARD LENGTH=123 78 8e-15
AT5G45980.1 | chr5:18648921-18650698 FORWARD LENGTH=326 67 1e-11
AT2G33880.1 | chr2:14341639-14343597 REVERSE LENGTH=379 65 5e-11
AT1G20700.1 | chr1:7182558-7183866 FORWARD LENGTH=212 63 2e-10
AT4G35550.1 | chr4:16875814-16877167 REVERSE LENGTH=269 62 3e-10
AT1G20710.1 | chr1:7184485-7185267 FORWARD LENGTH=198 57 1e-08
AT3G03660.2 | chr3:889515-892162 REVERSE LENGTH=298 55 5e-08
AT5G17810.1 | chr5:5880576-5882602 REVERSE LENGTH=269 54 1e-07
>AT5G59340.1 | chr5:23933408-23934627 REVERSE LENGTH=261
Length = 260
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 55/72 (76%)
Query: 43 ARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKAXXXX 102
+RW PTK+QI +LE LY++G+RTP+A+QIQQIT RLR +GHIEGKNVFYWFQNHKA
Sbjct: 13 SRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQ 72
Query: 103 XXXXXSFDYFSK 114
YF++
Sbjct: 73 KQKQERMAYFNR 84
>AT3G18010.1 | chr3:6161155-6163183 REVERSE LENGTH=351
Length = 350
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/56 (73%), Positives = 48/56 (85%)
Query: 43 ARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
+RW PT +Q+ VLE LYRQG RTP+A+ IQQITA+LR +G IEGKNVFYWFQNHKA
Sbjct: 75 SRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKA 130
>AT2G01500.1 | chr2:224470-225997 REVERSE LENGTH=272
Length = 271
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 45/55 (81%)
Query: 44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RW PT EQI LE LYR G RTPT EQIQQI ++LR++G IEGKNVFYWFQNHKA
Sbjct: 61 RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKA 115
>AT2G28610.1 | chr2:12262115-12263286 FORWARD LENGTH=245
Length = 244
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 45/57 (78%)
Query: 42 NARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
+ RW PT EQ+ +LE +YR G+RTP A QIQQITA L +G IEGKNVFYWFQNHKA
Sbjct: 6 STRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKA 62
>AT2G17950.1 | chr2:7809100-7810671 REVERSE LENGTH=293
Length = 292
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
Query: 44 RWTPTKEQIAVLEGLY-RQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RWTPT EQI +L+ LY +R+PTA+QIQ+ITARLR+ G IEGKNVFYWFQNHKA
Sbjct: 38 RWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKA 93
>AT1G46480.1 | chr1:17236903-17237953 REVERSE LENGTH=252
Length = 251
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 43 ARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RW PT+EQI +LE LY+ G+RTP A+QI+ IT +L ++G IEGKNVFYWFQNHKA
Sbjct: 89 TRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKA 144
>AT3G11260.1 | chr3:3527606-3528263 FORWARD LENGTH=183
Length = 182
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 45/69 (65%)
Query: 43 ARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKAXXXX 102
RW PT EQ+ +L L+R GLRTPT +QIQ+I+ L +G IE KNVFYWFQNHKA
Sbjct: 23 GRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQ 82
Query: 103 XXXXXSFDY 111
S D+
Sbjct: 83 KRRKISIDF 91
>AT5G05770.1 | chr5:1734487-1734855 FORWARD LENGTH=123
Length = 122
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 43 ARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RW PT EQ+ +L L++ GLRTP+ +QIQ+I+ L +G IE KNVFYWFQNHKA
Sbjct: 28 GRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKA 83
>AT5G45980.1 | chr5:18648921-18650698 FORWARD LENGTH=326
Length = 325
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RW P EQI +LE ++ G P E+IQ+I RL+E+G I NVFYWFQN K+
Sbjct: 55 RWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKS 109
>AT2G33880.1 | chr2:14341639-14343597 REVERSE LENGTH=379
Length = 378
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RW P EQI +LE ++ G+ P E+I++I A+L+E+G + NVFYWFQN K+
Sbjct: 55 RWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKS 109
>AT1G20700.1 | chr1:7182558-7183866 FORWARD LENGTH=212
Length = 211
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RWTPT Q+ +LE +Y +G TP +I++I L EHG I NV+ WFQN +A
Sbjct: 95 RWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRA 149
>AT4G35550.1 | chr4:16875814-16877167 REVERSE LENGTH=269
Length = 268
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
RWTPT Q+ +LE ++ QG TP+ ++I+ IT L +HG I +NV+ WFQN +A
Sbjct: 99 RWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRA 153
>AT1G20710.1 | chr1:7184485-7185267 FORWARD LENGTH=198
Length = 197
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 51 QIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98
Q+ +LE +Y++G TP +I++IT L EHG I KNV++WFQN +A
Sbjct: 86 QLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRA 133
>AT3G03660.2 | chr3:889515-892162 REVERSE LENGTH=298
Length = 297
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 43 ARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQN 95
+RW+P EQI +LE ++ G+ P E+ +I L + G + NVFYWFQN
Sbjct: 32 SRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQN 84
>AT5G17810.1 | chr5:5880576-5882602 REVERSE LENGTH=269
Length = 268
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 43 ARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQN 95
ARW+P EQI +LE ++ G P ++ +I L + G + NVFYWFQN
Sbjct: 20 ARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQN 72
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,757,244
Number of extensions: 99330
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 15
Length of query: 313
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 215
Effective length of database: 8,419,801
Effective search space: 1810257215
Effective search space used: 1810257215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)