BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0854500 Os01g0854500|AK102203
(200 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11260.1 | chr3:3527606-3528263 FORWARD LENGTH=183 121 3e-28
AT5G05770.1 | chr5:1734487-1734855 FORWARD LENGTH=123 102 1e-22
AT2G01500.1 | chr2:224470-225997 REVERSE LENGTH=272 82 1e-16
AT2G28610.1 | chr2:12262115-12263286 FORWARD LENGTH=245 79 2e-15
AT3G18010.1 | chr3:6161155-6163183 REVERSE LENGTH=351 79 2e-15
AT5G59340.1 | chr5:23933408-23934627 REVERSE LENGTH=261 77 6e-15
AT1G46480.1 | chr1:17236903-17237953 REVERSE LENGTH=252 75 2e-14
AT2G17950.1 | chr2:7809100-7810671 REVERSE LENGTH=293 73 9e-14
AT5G45980.1 | chr5:18648921-18650698 FORWARD LENGTH=326 65 3e-11
AT2G33880.1 | chr2:14341639-14343597 REVERSE LENGTH=379 64 4e-11
AT3G03660.2 | chr3:889515-892162 REVERSE LENGTH=298 57 4e-09
AT4G35550.1 | chr4:16875814-16877167 REVERSE LENGTH=269 56 1e-08
AT5G17810.1 | chr5:5880576-5882602 REVERSE LENGTH=269 55 2e-08
AT1G20700.1 | chr1:7182558-7183866 FORWARD LENGTH=212 54 6e-08
>AT3G11260.1 | chr3:3527606-3528263 FORWARD LENGTH=183
Length = 182
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 103/204 (50%), Gaps = 52/204 (25%)
Query: 5 SGRVGVKCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQ 64
+G G KCGRWNPT EQ+K+LT+LFRAGLRTP+T+QIQ+IST LS +GK+ESKNVFYWFQ
Sbjct: 15 NGGTGTKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQ 74
Query: 65 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAAHEGDADLVLQPPESKREARSYGHHHRL 124
N + ++ + + HHH
Sbjct: 75 NHKARERQ-------------------------------------KRRKISIDFDHHHHQ 97
Query: 125 MTCYVRDVVE-TEAMWERPTREVETLELFPLKSYDLEVDKVRYVRGGGGEQCRE------ 177
+ RDV E +E + + +ETL+LFP+ S++ KV +R G Q RE
Sbjct: 98 PS--TRDVFEISEEDCQEEEKVIETLQLFPVNSFEDSNSKVDKMRARGNNQYREYIRETT 155
Query: 178 -ISFFDVAA-----GRDPPLELRL 195
SF ++ PPL+LRL
Sbjct: 156 TTSFSPYSSCGAEMEHPPPLDLRL 179
>AT5G05770.1 | chr5:1734487-1734855 FORWARD LENGTH=123
Length = 122
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/56 (78%), Positives = 51/56 (91%)
Query: 10 VKCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
KCGRWNPT EQVK+LT+LF+AGLRTPST+QIQ+IS LS +GK+ESKNVFYWFQN
Sbjct: 25 AKCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQN 80
>AT2G01500.1 | chr2:224470-225997 REVERSE LENGTH=272
Length = 271
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 43/52 (82%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RWNPT EQ+ L EL+R+G RTP+TEQIQ+I++ L +G++E KNVFYWFQN
Sbjct: 61 RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQN 112
>AT2G28610.1 | chr2:12262115-12263286 FORWARD LENGTH=245
Length = 244
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 44/56 (78%)
Query: 10 VKCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
V RW PT EQ+ +L E++R+G+RTP+ QIQ+I+ HL+ +G++E KNVFYWFQN
Sbjct: 4 VASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQN 59
>AT3G18010.1 | chr3:6161155-6163183 REVERSE LENGTH=351
Length = 350
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 41/53 (77%)
Query: 13 GRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RWNPT +Q++VL EL+R G RTPS + IQ+I+ L +GK+E KNVFYWFQN
Sbjct: 75 SRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQN 127
>AT5G59340.1 | chr5:23933408-23934627 REVERSE LENGTH=261
Length = 260
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 41/52 (78%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RWNPT +Q+ +L L++ G+RTPS +QIQ+I+ L A+G +E KNVFYWFQN
Sbjct: 14 RWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQN 65
>AT1G46480.1 | chr1:17236903-17237953 REVERSE LENGTH=252
Length = 251
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RWNPT EQ+ +L L++ G+RTP+ +QI+ I+ L +GK+E KNVFYWFQN
Sbjct: 90 RWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQN 141
>AT2G17950.1 | chr2:7809100-7810671 REVERSE LENGTH=293
Length = 292
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 14 RWNPTAEQVKVLTELF-RAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RW PT EQ+K+L EL+ +R+P+ +QIQ+I+ L FGK+E KNVFYWFQN
Sbjct: 38 RWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQN 90
>AT5G45980.1 | chr5:18648921-18650698 FORWARD LENGTH=326
Length = 325
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 5 SGRVGVKCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQ 64
S R+ RWNP EQ+++L +F +G P E+IQRI L +G++ NVFYWFQ
Sbjct: 46 SDRIPDPKPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQ 105
Query: 65 N 65
N
Sbjct: 106 N 106
>AT2G33880.1 | chr2:14341639-14343597 REVERSE LENGTH=379
Length = 378
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RWNP EQ+++L +F +G+ P E+I+RI L +G+V NVFYWFQN
Sbjct: 55 RWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQN 106
>AT3G03660.2 | chr3:889515-892162 REVERSE LENGTH=298
Length = 297
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RW+P EQ+ +L +F +G+ P E+ RI L FG V NVFYWFQN
Sbjct: 33 RWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQN 84
>AT4G35550.1 | chr4:16875814-16877167 REVERSE LENGTH=269
Length = 268
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RW PT Q+++L +F G TPS ++I+ I+ LS G++ +NV+ WFQN
Sbjct: 99 RWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQN 150
>AT5G17810.1 | chr5:5880576-5882602 REVERSE LENGTH=269
Length = 268
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 13 GRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RW+P EQ+ +L +F +G P ++ RI L FG V NVFYWFQN
Sbjct: 20 ARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQN 72
>AT1G20700.1 | chr1:7182558-7183866 FORWARD LENGTH=212
Length = 211
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65
RW PT+ Q+++L ++ G TP+ +I+ I+T LS G++ NV+ WFQN
Sbjct: 95 RWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQN 146
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,900,440
Number of extensions: 130365
Number of successful extensions: 313
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 15
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)