BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0645900 Os04g0645900|Os04g0645900
(347 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0645900 658 0.0
Os01g0857600 Conserved hypothetical protein 630 0.0
Os05g0445800 Conserved hypothetical protein 164 8e-41
Os05g0446500 Conserved hypothetical protein 97 2e-20
>Os04g0645900
Length = 347
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/347 (96%), Positives = 335/347 (96%)
Query: 1 MDGEDTGGQYVIRYEKDGEMERVLERQAELIGQYEAEEEAQRQWEKQFNENRSSAKVHVE 60
MDGEDTGGQYVIRYEKDGEMERVLERQAELIGQYEAEEEAQRQWEKQFNENRSSAKVHVE
Sbjct: 1 MDGEDTGGQYVIRYEKDGEMERVLERQAELIGQYEAEEEAQRQWEKQFNENRSSAKVHVE 60
Query: 61 AENKACQIENGWEQSKEHARLADQAVHCNEEAKPGVKNHPSASNNRSAGLLLNDSLPESH 120
AENKACQIENGWEQSKEHARLADQAVHCNEEAKPGVKNHPSASNNRSAGLLLNDSLPESH
Sbjct: 61 AENKACQIENGWEQSKEHARLADQAVHCNEEAKPGVKNHPSASNNRSAGLLLNDSLPESH 120
Query: 121 ASGQEAAADQRXXXXXXXXXXXXQSQGSSNVAGTMTGKNQEQGNENPDGCSSYCDIKAPS 180
ASGQEAAADQR QSQGSSNVAGTMTGKNQEQGNENPDGCSSYCDIKAPS
Sbjct: 121 ASGQEAAADQRDAHEEHHDHCHAQSQGSSNVAGTMTGKNQEQGNENPDGCSSYCDIKAPS 180
Query: 181 DGSPSMSDATLNSKVSDWSSSSFHDHGDNQVDAGPDQQPTSNMDIESVLQALQLARISLS 240
DGSPSMSDATLNSKVSDWSSSSFHDHGDNQVDAGPDQQPTSNMDIESVLQALQLARISLS
Sbjct: 181 DGSPSMSDATLNSKVSDWSSSSFHDHGDNQVDAGPDQQPTSNMDIESVLQALQLARISLS 240
Query: 241 QKLSKPVPPSQVTLALPAPGDDEHSEDDGYSPVDDEFTSARDELCSSSQSPEQEILALPA 300
QKLSKPVPPSQVTLALPAPGDDEHSEDDGYSPVDDEFTSARDELCSSSQSPEQEILALPA
Sbjct: 241 QKLSKPVPPSQVTLALPAPGDDEHSEDDGYSPVDDEFTSARDELCSSSQSPEQEILALPA 300
Query: 301 PEDYHDRENLPVNDDATISLTEEQTSSSPHRQEILALPAPHLLDILA 347
PEDYHDRENLPVNDDATISLTEEQTSSSPHRQEILALPAPHLLDILA
Sbjct: 301 PEDYHDRENLPVNDDATISLTEEQTSSSPHRQEILALPAPHLLDILA 347
>Os01g0857600 Conserved hypothetical protein
Length = 547
Score = 630 bits (1626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/342 (92%), Positives = 318/342 (92%), Gaps = 2/342 (0%)
Query: 1 MDGEDTGGQYVIRYEKDGEMERVLERQAELIGQYEAEEEAQRQWEKQFNENRSSAKVHVE 60
MDGE GGQYVIRYEKDGEMERVLERQAELIGQYEAEEEAQRQWEKQFNENRSSAKVHVE
Sbjct: 52 MDGEVAGGQYVIRYEKDGEMERVLERQAELIGQYEAEEEAQRQWEKQFNENRSSAKVHVE 111
Query: 61 AENKACQIENGWEQSKEHARLADQAVHCNEEAKPGVKNHPSASNNRSAGLLLNDSLPES- 119
AENKACQIENGWEQSKEH+RLADQAVHCNEEAKPGVKNHPSASNNRSAGLLLN SLPES
Sbjct: 112 AENKACQIENGWEQSKEHSRLADQAVHCNEEAKPGVKNHPSASNNRSAGLLLNGSLPESP 171
Query: 120 -HASGQEAAADQRXXXXXXXXXXXXQSQGSSNVAGTMTGKNQEQGNENPDGCSSYCDIKA 178
SGQEAAADQR QSQG+SNVAGTMTGKNQEQGNENPDGCSSYCDIKA
Sbjct: 172 QDTSGQEAAADQRDSHEELHGHCHAQSQGNSNVAGTMTGKNQEQGNENPDGCSSYCDIKA 231
Query: 179 PSDGSPSMSDATLNSKVSDWSSSSFHDHGDNQVDAGPDQQPTSNMDIESVLQALQLARIS 238
PSDGSPSMSDATLNSKVSDWSSS FHDHGDNQVDAGPDQQPTSNMDIE VLQALQLARIS
Sbjct: 232 PSDGSPSMSDATLNSKVSDWSSSRFHDHGDNQVDAGPDQQPTSNMDIECVLQALQLARIS 291
Query: 239 LSQKLSKPVPPSQVTLALPAPGDDEHSEDDGYSPVDDEFTSARDELCSSSQSPEQEILAL 298
LSQKLSKPVPPSQVTLALPAPGD EHSEDDGYSPVDDEF SARDELCSSSQSP+QEILAL
Sbjct: 292 LSQKLSKPVPPSQVTLALPAPGDHEHSEDDGYSPVDDEFNSARDELCSSSQSPDQEILAL 351
Query: 299 PAPEDYHDRENLPVNDDATISLTEEQTSSSPHRQEILALPAP 340
PAPEDYHDRENLP NDDATISLTEEQTSSSPHRQEILALPAP
Sbjct: 352 PAPEDYHDRENLPANDDATISLTEEQTSSSPHRQEILALPAP 393
>Os05g0445800 Conserved hypothetical protein
Length = 715
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 137/343 (39%), Positives = 175/343 (51%), Gaps = 59/343 (17%)
Query: 10 YVIRYEKDGEMERVLERQAELIGQYEAEEEAQRQWEKQFNENRSSAKVHVEAENKACQIE 69
Y + YEKDGEMERVLE+QAELIGQYEAEE AQR+WEK+FN R S VE NK QIE
Sbjct: 250 YSVEYEKDGEMERVLEKQAELIGQYEAEEYAQREWEKKFNNCRDSTAGDVELGNKLNQIE 309
Query: 70 NGWEQSKEHARLADQAVHCNEEAKPGVKN-----HPSASNNRSAGLLLNDSLPESHA--- 121
EQ A++ D+ V +E P KN PS + + L + PE +A
Sbjct: 310 KACEQRDRAAQIKDKEV--SEVGGPSDKNLFADDSPSECLSTDSVFGLPPNAPEENAIKH 367
Query: 122 ---------------------SGQEAAADQ---RXXXXXXXXXXXXQSQGSSNVAGTMTG 157
SG +A D+ + ++ SS++ G
Sbjct: 368 CKVTECDHDFGEATSTVVSVDSGPQARKDESVNKSFTEIIEGSGNNIAKSSSSLQGNYDS 427
Query: 158 K-----NQEQGNENPD--------GCSSYCDIKAPSDGSPSMSDATLNSKVSDWSSSSFH 204
N++Q +E+ D CS I PS S S T SKVS+WSSS FH
Sbjct: 428 SQNARHNEDQVDESSDSGPGYHVNACSYEHYINTPS--VASRSSDTPKSKVSEWSSSCFH 485
Query: 205 DHGDNQVDAGPDQQPTSNMDIESVLQALQLARISLSQKLSKPVPPSQVTLALPAPGDDEH 264
+H DNQ+D QP+S+ + VL+ALQ A++SL +KLSKP PPS LALPAP + +
Sbjct: 486 NHTDNQIDTQM-HQPSSD-GVGGVLEALQRAKMSLREKLSKPSPPSLEMLALPAP-EYHY 542
Query: 265 SEDDGYSPVDDEFTSARDELCSSSQSPEQEILALPAPEDYHDR 307
+ DD SPV D S LC S+ P QEILALP P +Y R
Sbjct: 543 ATDD--SPVRDTELS----LCMST-FPSQEILALPEPAEYRSR 578
>Os05g0446500 Conserved hypothetical protein
Length = 715
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 85/140 (60%), Gaps = 12/140 (8%)
Query: 168 DGCSSYCDIKAPSDGSPSMSDATLNSKVSDWSSSSFHDHGDNQVDAGPDQQPTSNMDIES 227
+ CS I PS S S T SKVS+WSSS FH+H DNQ+D QP+S+ +
Sbjct: 451 NACSYEHYINTPS--VASRSSDTPKSKVSEWSSSCFHNHTDNQIDTQM-HQPSSD-GVGG 506
Query: 228 VLQALQLARISLSQKLSKPVPPSQVTLALPAPGDDEHSEDDGYSPVDDEFTSARDELCSS 287
VL+ALQ A++SL +KLSKP PPS LALPAP + ++ DD SPV D S LC S
Sbjct: 507 VLEALQRAKMSLREKLSKPSPPSLEMLALPAP-EYHYATDD--SPVRDTELS----LCMS 559
Query: 288 SQSPEQEILALPAPEDYHDR 307
+ P QEILALP P +Y R
Sbjct: 560 T-FPSQEILALPEPAEYRSR 578
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 2 DGEDTGGQYVIRYEKDGEMERVLERQAELIGQYEAEEEAQRQWEKQFNENRSSAKVHVEA 61
DG+D Y + YEKDGEMERVLE+QAELI QYE EE AQR+WE++FN +R S VE
Sbjct: 243 DGDDDN-PYTVEYEKDGEMERVLEKQAELIEQYEEEEYAQREWERKFNNSRDSTAGDVEL 301
Query: 62 ENKACQIENGWEQSKEHARLADQAVHCNEEAKPGVKN 98
NK QIE EQ + A++ D+ V +E P KN
Sbjct: 302 CNKLNQIEKACEQRDKAAQIKDKEV--SEVGGPSDKN 336
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.305 0.123 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,180,256
Number of extensions: 596648
Number of successful extensions: 1522
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1502
Number of HSP's successfully gapped: 6
Length of query: 347
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 245
Effective length of database: 11,709,973
Effective search space: 2868943385
Effective search space used: 2868943385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 156 (64.7 bits)