Os05g0446500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0446500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.16 | 0.221 | 9.93 | 0.338 | 0.216 | -0.592 | 0.673 | -0.794 | -0.149 | 3.31 | 25.72 | 83 | -- | -- |
| 22.95 | 0.225 | 9.94 | 0.218 | 0.272 | -0.639 | 0.482 | -- | -0.152 | 3.48 | 35.84 | 43 | -- | -- |
| 23.16 | 0.224 | 9.94 | 0.253 | 0.224 | -0.558 | -- | -0.317 | -0.165 | 4.04 | 25.71 | 79 | -- | -- |
| 23.33 | 0.225 | 9.94 | 0.205 | 0.221 | -0.522 | -- | -- | -0.177 | 4.24 | 25.8 | 83 | -- | -- |
| 25.15 | 0.234 | 9.93 | 0.266 | -- | -0.432 | -- | -0.272 | -0.133 | -- | 24.9 | 72 | -- | -- |
| 26.99 | 0.244 | 9.92 | 0.335 | 0.11 | -- | 0.341 | -- | -0.0633 | 4.37 | -- | -- | -- | -- |
| 27.18 | 0.244 | 9.92 | 0.333 | 0.125 | -- | -- | -- | -0.0651 | 5.8 | -- | -- | -- | -- |
| 25.28 | 0.234 | 9.93 | 0.24 | -- | -0.406 | -- | -- | -0.14 | -- | 25 | 70 | -- | -- |
| 24.36 | 0.23 | 9.95 | -- | 0.233 | -0.595 | -- | -- | -0.204 | 4.18 | 25.8 | 83 | -- | -- |
| 27.99 | 0.247 | 9.92 | 0.337 | -- | -- | -- | -- | -0.0622 | -- | -- | -- | -- | -- |
| 30.1 | 0.257 | 9.93 | -- | 0.13 | -- | -- | -- | -0.102 | 5.68 | -- | -- | -- | -- |
| 26.71 | 0.241 | 9.95 | -- | -- | -0.49 | -- | -- | -0.18 | -- | 25 | 83 | -- | -- |
| 30.98 | 0.26 | 9.93 | -- | -- | -- | -- | -- | -0.0995 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 2 | 20.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 4 | 20.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 5 | 20.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 6 | 20.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 9 | 20.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 34 | 21.02 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 18 |
| 117 | 21.36 | temperature | 15 | 90 | > th | dose dependent | sin | 9 | NA |
| 171 | 21.47 | temperature | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 198 | 21.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 210 | 21.53 | temperature | 25 | 270 | < th | dose independent | sin | 11 | NA |
| 219 | 21.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 223 | 21.56 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 246 | 21.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 285 | 21.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 297 | 21.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 300 | 21.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 349 | 21.86 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 11 |
| 357 | 21.88 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 9 |
| 361 | 21.88 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 438 | 22.05 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 11 |
| 451 | 22.09 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 491 | 22.18 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 12 |
| 512 | 22.22 | temperature | 25 | 270 | > th | dose independent | sin | 9 | NA |
| 516 | 22.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 550 | 22.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 558 | 22.29 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 576 | 22.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 593 | 22.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 614 | 22.35 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 642 | 22.38 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 650 | 22.39 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 662 | 22.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 689 | 22.43 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 712 | 22.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 899 | 22.64 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 22 |
| 915 | 22.66 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 22 |
| 920 | 22.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 943 | 22.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 974 | 22.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 999 | 22.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |